Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00059 ATGGCTCAGGTTCCGTTTCCCTCGAATCTTTTGCCAGTAGATGGAAGCCCTGAATGGATGAGTAGGGCAGACAATGCATGGCAGCTTGTGGCTGCAACGCTGGTGGGTCTGCAGAGTGTTCCAGGGCTCATAATATTGTATGGTGGAGCTGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTTTGCATGTGTGTTTTTCTGTTGGGTTGTGTGGGGATACAGAATGTCATTTGGTGAACCACTTGTCCCTTTCTGGGGAAAGCCTGCCATGTCACTTAATCATGCATATCTCTTCGAGAAGGCCTTTCTGGGGGCCTTCCCTAATGCCACAATGGTGTATTTCCAGTGTGTGTTTGCAGCCATTACTCTGATTCTCATTGCTGGGGCTGTGTTGGGGCGCATGAACTTCTATGCCTGGATGCTGTTTGTGCCTTTGTGGCTTACATTCTCATACACCTTCACAGCTTTCAGCATATGGAGTACAAAGGGCTTCTTGTCCAAAATGGGGATAATAGATTACTCAGGTGGATATGTCATCCATTTGTCTTCTGGGGTTGCTGGTTTCACTGCTGCATTTTGGGTTGGACCAAGACTAAACAAGGACAGGGAAAGGTTTCCTCCAAACAACATCCTTCTGATGCTGGCAGGTGCAGGGATGTTGTGGATGGGGTGGACAGGATTCAACGGAGGAGATCCATACACAGTAAATGCAGATGCTTCACTTGCCGTCCTCAACACCCACGCTTGCACTGCCACCAGCTTGCTCGTTTGGGTCATTCTTGATGTCATCTTTTTCCGAAAACCTTCTGTCATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTCTGCATTACTCCTGCTGCAGGAGTTGTGGAGGGATGGGCAGCACTTCTAATGGGAGTGTTCTCTGGGTCAATTCCTTGGTTCACCATGATGGTGATCCACAAGAGATCAAAGCTACTGCAGAAGGTTGATGACACTATGGCAGTGTTCCACACTCATGCTATTGCAGGAACCTTGGGAGGACTACTCACTGGACTGTTTGCCGAGCCAAGACTCAACACATTGTTCTATGGAGCTGCTAATCAATACGTTGGCTTTTTCTATGGTTTCCATTCCAAAAGGATACACACAGGGTTCAGGCAAATGGGGGTACAAATCATTGGGATTATCTTTGTTGTCTTTGTCAATGTTGTGTCCACAAGCTTGATATGCCTCTTCATCAGACTTTTTGTTCCACTGAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAAGCTGCTCATGGGGAAGAGGCTTATGCCATCTGGGGTCAGGGTGATAAACTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTGTATGATGATGTTGAAGCTGGGTCACACAAGAAGAAACAAGGTGGCGTGGTTGAGATGATGTAG 1443 0.4671 MAQVPFPSNLLPVDGSPEWMSRADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVVWGYRMSFGEPLVPFWGKPAMSLNHAYLFEKAFLGAFPNATMVYFQCVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTKGFLSKMGIIDYSGGYVIHLSSGVAGFTAAFWVGPRLNKDRERFPPNNILLMLAGAGMLWMGWTGFNGGDPYTVNADASLAVLNTHACTATSLLVWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVEGWAALLMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVFHTHAIAGTLGGLLTGLFAEPRLNTLFYGAANQYVGFFYGFHSKRIHTGFRQMGVQIIGIIFVVFVNVVSTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGSHKKKQGGVVEMM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00059 480 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886
Vimu11g00059 480 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886
Vimu11g00059 480 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886
Vimu11g00059 480 SUPERFAMILY Ammonium transporter 19 422 - -
Vimu11g00059 480 PANTHER AMMONIUM TRANSPORTER MEP2 9 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g00059 480 FunFam Ammonium transporter 9 443 - -
Vimu11g00059 480 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu11g00059 480 Gene3D Ammonium transporter AmtB like domains 13 444 IPR029020 -
Vimu11g00059 480 NCBIfam ammonium transporter 24 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g00059 480 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00059 Vimu-Chr11 527487 529330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00059 115 466 Inorganic Solute Cotransporters AT2G38290 62.216 2.43e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00059 K03320 - gmx:100787856 891.723