Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00058 TTGAAGCGCCGCTCGCCGCTCTCGTGTTCTTTAACAGAAGAGCCATCCAAGAAACTATTTTCTGACGAGGACCTCTCACTTCACGGCTACACCCCCGTCCCCATTCCGTTCAACTTGGATTTCTGCCCTTATCGCCCTTCGGCTCCGGCGCCTCTCACTCCTACGGAGAGAGGGTTTGGGCTGCCACCCCTGCCGAGTCTGACTTCCAATTTGAGTGTCCTTGTCCTTGTGCGAAAGGCTATTGAGTTGAATCGTACAGTACATTTGGGACGTCGCATTAGAGTTGGAATAGCTCATGAAAGAGGTGAATATAGCTCCAACAAAAGCAACTGGAGCAAGTCTATCCTCAAGAGTGAAATAGGTCAGCCCACCGAAAGTTCAAAGAGTTTACAGCACCATGACAAAGAGATTGAGGGAAAACCCTCCGGATTTCTGTGCGAAAGTTCTAGAAGGCTACCTACTTTGGAAGAACAAAATTGTCCATCAAAGACAATAAATGTCAGAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAAACTTTTTCCAAAGATGTGGAAAAATTGTTGATGTTTGTCTACGTATGGATCACAAAGGGAGGTTTAATGGCTTTGGGCAAGTTGTGTTTGCCACAGCTGAAGCTGCAATGAAAGCTGTTGATTTGAATAATACAGAATGGTTGAGACGGCACATTCGAGTTGATTTGGCCAAAGGAAAAGGTGAACATGCCCATAGTAGAAGCAACTGGAGCAACTTATTTCAGAAGTGTGAAAGAGATCAGTCTCCAATTATATATGTGAGGGGTTTCTGTAGTTCCCTTCCAATAGAAAAGATAAAAGCTAGCCTAGAGGAGCATTTTGGTTCTTGTGGAGCGATTGCAAGGATATCAATTCCAAAACATCGTGAGTCTGGTGATGTTAAGGGGTTTGCTCACTTGGAGTTCAACCATTTTGTTTGTGTGAATAAAGCTCTACATCTTGATCAGAGTGAGCTTGGAGGTTATCGCTTGAGAGTTGAAAAGGCAAAGCCTCAACGTGAGAACCAAGGTATAGGTGGTGGAAGAAGTGGTGGTTGTCACAAGTTTGGTGGAAGGGATGGCAGTGATTGTAGCAGCAAAGTGGGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATATTTCTGCTGAAGGCACAGAATGCAACGGATCCTGA 1200 0.4533 MKRRSPLSCSLTEEPSKKLFSDEDLSLHGYTPVPIPFNLDFCPYRPSAPAPLTPTERGFGLPPLPSLTSNLSVLVLVRKAIELNRTVHLGRRIRVGIAHERGEYSSNKSNWSKSILKSEIGQPTESSKSLQHHDKEIEGKPSGFLCESSRRLPTLEEQNCPSKTINVRNLSYRVERADMENFFQRCGKIVDVCLRMDHKGRFNGFGQVVFATAEAAMKAVDLNNTEWLRRHIRVDLAKGKGEHAHSRSNWSNLFQKCERDQSPIIYVRGFCSSLPIEKIKASLEEHFGSCGAIARISIPKHRESGDVKGFAHLEFNHFVCVNKALHLDQSELGGYRLRVEKAKPQRENQGIGGGRSGGCHKFGGRDGSDCSSKVGWGRSGGGGWHSLHISAEGTECNGS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00058 399 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 270 371 - -
Vimu11g00058 399 Gene3D - 105 249 IPR012677 -
Vimu11g00058 399 SMART rrm1_1 264 340 IPR000504 GO:0003723
Vimu11g00058 399 SMART rrm1_1 164 235 IPR000504 GO:0003723
Vimu11g00058 399 SUPERFAMILY RNA-binding domain, RBD 155 250 IPR035979 GO:0003676
Vimu11g00058 399 Gene3D - 250 382 IPR012677 -
Vimu11g00058 399 SUPERFAMILY RNA-binding domain, RBD 272 368 IPR035979 GO:0003676
Vimu11g00058 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Vimu11g00058 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 231 IPR000504 GO:0003723
Vimu11g00058 399 MobiDBLite consensus disorder prediction 122 145 - -
Vimu11g00058 399 FunFam Nucleolin 2 248 386 - -
Vimu11g00058 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 239 IPR000504 GO:0003723
Vimu11g00058 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 344 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00058 Vimu-Chr11 514758 522768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00058 123 317 Eukaryotic Initiation Factors Gene Family AT4G34110 22.613 9.99e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00058 - - vun:114173183 496.893