Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00056 ATGCATATTCACGAGGGTGATAGTTCTGAAGAAAATGATGAAGCAACACAGAAAGAGATGGATGCTTTGCCTGTAAAGAGTTCAGAGAATAGTGCAGAAGGAATTGAAGAAGACTCTAAAACACCTCAAGATTTCATTTGTGTGAAAGATGTTTGGGATGTGGAGATGGTTGGTGCTCCCTCTGTAATTCAACAATATCAAATCAGTCATAACATGTTTCCTGGAAATTTGCAGCCTACAATGCTATTTACACTGAATGAACAATCTGCTGGATCAAAGACTATATGTGCTAAAAACTTGTCATACAGTGTGGAATGTGCTGATTTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACACACGGACAGTGAAGGGAGGTTCAAAGGCTTTGGGCATGTTGAGTTTGCATCAGCAGAAGCAGCACAAAAACAAATGATTTTAAAACAGCTGAAAGCTTTTCACAGATAG 483 0.3851 MHIHEGDSSEENDEATQKEMDALPVKSSENSAEGIEEDSKTPQDFICVKDVWDVEMVGAPSVIQQYQISHNMFPGNLQPTMLFTLNEQSAGSKTICAKNLSYSVECADLEDLFKECGEIVDIRLHTDSEGRFKGFGHVEFASAEAAQKQMILKQLKAFHR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00056 160 Gene3D - 2 156 IPR012677 -
Vimu11g00056 160 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g00056 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 160 IPR000504 GO:0003723
Vimu11g00056 160 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 11 149 - -
Vimu11g00056 160 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Vimu11g00056 160 MobiDBLite consensus disorder prediction 1 39 - -
Vimu11g00056 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 148 IPR000504 GO:0003723
Vimu11g00056 160 SMART rrm1_1 94 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00056 Vimu-Chr11 506693 507813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00056 88 150 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 9.08e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00056 - - vun:114173183 166.777