Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00049 ATGGACTGCTTTGTGGGTTTTGCATCTTCTGTTTCAAGAGATTTAGTGTGTAGGGCACTAAATCAATTGCGTTATCTTTACTCCTTTAATAATTTTGTCAAAAAGCTTGAGCAAGGAAAGGACGATTTCATTGTAACAAGAGATGATGTCCAAAAATCTGTTGAAGATGCGAAGAGAAAAACTAGAGAGACTAGTGGAGTTGTTGTCAAGTGGCTGCAAGATGCTACGAGTGACATAGATAAAGTGAATCAGTTGCTAGAAGAGGCAAGAACAAAAAAAATATGTTGCTTTGGGTATTGTCCAAATTGGATTTGGCGATATCGTATAGGAAAAAAGCTAGCATATAAATTTTTTGACCTTGAAAAGTTCATTGATCAGGGTAAAAAATATGTTTCATTTGACCGCATCCCTACGCTACCTTCAGACACCCTTGACATTCTTTCAGAAAAATGGATGAATTTTGAGAGTAGACAATCTACATACGAGCAACTACTGGATGCAGTGAAAAATAATGATGTTTCCATGATCGGTTTGTATGGAATGGGGGGTTGTGGTAAAACCACATTAGCAATGGAAATTAGGAAGTTCGTACAAGCAGAGCATGTTTTTGACAAAGTTCTTTTTGTGCCTATTTCTAGTACAGTGGAAGTTAGAAGGATTCAAGAAAAATTTGCAAGTTCACTGCAATTTGAATTTCCAGAAACCGAAGAAATGCAGAGAGCCCAAAGATTGTGCTTGAGATTAACTCAAGAAAAAAGTGTTCTTATAATTCTAGATGATGTGTGGGAGAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTGAACACCATAAAGGTTGTAAGATTCTCATTACAACTAGATCAGAAGCAGTTTGTACTTTAATGGATTGTCAAAGAAAGATTTACTTGCCAATTTTAACGGATGAAGAAGCATGGACTCTTTTCCAAAATAAAGCACTTATATCAGAAGGCAGCCCTTATACCTTAAAGAATCTGGGAAGATTAATTTCCAATGAGTGTAAAGGATTGCCGGTTGCCATTGCAGCTGTTGCTTGTAGTTTGAAGGGAAAACCTGAGACGGTATGGAGTGTTTCATTGAATAAATTGAGACATTCTAAGCCACTAAATATTGAAAAAGGTTTGACTGATCCCTACAAGTGCTTGCGGTTGAGCTATGATAATTTGGATGATAAAGAAGCTGAATCACTCTTCCTGTTGTGCTCTGTATTTCCTGAAGATTCTGAAATTCAAGTTGAAGTTTTAACAAGATGTGCAATAGGATTAGGTGTAGCTGGAGAAGCTCACTCATATGAAGAGGCAAGGAGTGAAGTGATTGCAGCTAAATTTAAGCTTGTTAGTTGTTGTTTATTGTTGGATGCAGATGATGAATGGGTCAAAATGCATGACATAGTTCGTGATGTGGCCCACATAATAGCAAAAAATGAGAATAAGATGATAAAATGTGAACTGGAGAAAGATGTTAGAGTGGAACAAAATTCTGTAAGATATCTATGGTGTGCGAAAATTCCAAATGATTTGGATTGCTCCAATCTTGAGTTTTTATTCTTACAGACAAAGATGAAAGAATTTGATGGGATTTTCAAAAGAATGGGAATACTCAAAGTTTTGATTCTTGTCAACGATGGGTATAGAAAAACACGATTGTCAAAAATATCTTTCAAAACATTAACAAATCTTCGTTATCTATTCATTCAGAATTATGAATTGAGCGACTTCTCATTTTTAGGCGGTATGAAGAATCTTCAAAGTCTCTCGTTATGTTATTGTTTACTACCTCCTTTTCCTGAATTACAAACCGATTTTGCAATTACACTAAAATTGTTAGAGTTGAGAGGATGTGATATTGAAGTGAAGAATTTTGAAGTGATGAAGAGAATCCCGCTTTTGGAAGAGTTGTACATTATTGATATTCAAGGAAAATGGTATGCTAACAGTAAAGACAATATTGAATTCTTTAAGACTTTTAGCATTCCCGAAACACTGCAAAGGTATGGAATTGTATTAGGGTCTCGTTACTTTGATCATTATAGTAATGGAGATATTTACATTGATGACAGAACTTTATTACTTAACCATTTTGACATATCAAATGAGGTAATAAAGGGTTTGGCAAAAACAGCAAAGGATCTATTTGTAGGAAATGTTCATGGAGGTGCAAAAAATATGATCCCTGATATATTTGAAATTGAAGGAGGAGGTTTGAATGAGTTGAATACGTTGGAGATACTTGATTCTGAAGAGTTAGAATGTTTGATTGACACTCGTAGTCAGTCGACTGAGGTGGTAAGTCTCTTCTCCAAGTTGCAAACACTGAGAATCGATAACATGAAAAATCTAAGAGTTATATGGCATTGTTTTCTTCCTGCCAATGGGTCTTTTGAGAACTTAGAGAAACTGTATTTAAGTTATTGTCCACGGTTGACATCTCTCTTCACGTATGTGGTTGCTCGAAGTTTGGTAAAATTGAAAATATTAAAAATAGCTAGATGTGATGAACTGAAGCATATATTAACATATGATGAGAAAAGTGAAGATGAATTCACCAGTGGGCATCCTGTACAAATCTTCCAAAATCTTCAGGAAGTAGAGGTATATAGCTGTCCAGAATTAAAACATATATTCTCAACCAACATTGTAGGAGGCTTAACTCAATTGAAAGTTCTCGAGATAAAAGAATGTGACAAGCTAGAACAAATAATTGGAGATATTGTTCCATTAACAGAGCAGGATAGAAAAGAAGAACTTGATGAAATCGTTGAGGAAGGAACTCTGTCCAGCCTTGCAAGCCTTAAGATAAAACGTTGTGGGAAGTTAGGCTCAATTTTTACAGCATCGATAGCTAAGACCTTGACTTCTTTGGAAGATTTGTTCATAGAAGATTGCAAAAGTTTGAAGGATATAGTAACTCACGAAAGGATCAATAAAAATCAGGAGGAAAGCATTGTTGAGGATGACTATGATTGTCAGAGTGATATTTCAATCTTCCAAAGTTTGAAAAAGCTACATATCAGTAATTGTGACTTATTGGAGGGTATATTCCCTGTTTCTTTTGTTGGAGAATTGAATGATATAACAAATAAAGACGCTGCTGATTTGGAAAACTTCTTTAGTCGAAATAATGCTCAAATTAAGCTTCCTGCTTTACAAGTACTTGAACTTGGTCGTATTCGGGACAGAACCATTGTTGGTAGTTATGATGTGATATGTAAATCTTTAAGAACACTGTCATTGGATATTGGGAGATATGTTGGGTTTTTCAGCATAAATTGTTCAACAGATGCTTCCGAAGCTACAAAAACGGATTTTATTGTAATCAAGATATCGAACTCAGATTTTATTCCCCCGGTTGTTGAATGTCTTTCAAAACAACCACGTGATTTGAACTTGATTATGACAAACAATATTAGAGAGATTGAACTGAAAGGCTTTGATAAGTCAAGGTACCTTTTTAAACTGACCATTGCTTCATCATTGATGATGTTGGAAATTTTGAGAATTGAGAAATGTGAAGGACTTGAGTACATTATAGACACTGATGATGAATATGGCAAAGAGAATATGAAAGCTATCTTTCCTAACTTAAAACAACTCTCAGTGTATGACTGTTTCCGATTGAAATATATGTTTGGGCAATATCACGTAACTAATAAGGATTATGAGGAGATTCATATTCAATTCTCAGCATTGGAAATACTTTCTCTTGATGATCTACCAAACTTTGTTAGCATTTGTTCTACCAACACCGTCACTGTGACGTGGCCATCTTTGAAGGACTTTCGGTGTTCCAAATGTTTGTATCCATTTTATGGTTCTGATAGTTGTTTGATGATTCCTACAAATTCAAGAGAGCCAATTATGACAAGTACGAAGGATCCGAAAGGGATTCAGAACCATCTCCACACTTTGGAATCTCTAAACATATCGCATTGTGATGTAGAATGTATTTTATTTCTTAATGAAGATGAAATGAGCCAACAAGTGAGTTTAAGGTTAGAGAAGTTGGAGTTGTATAATCTAGCTCAAATGACTTATATTTGGGTGGGTCCCAACAATTCACTTACTCTCCAACATCTTACCAGATTAAAAATATGGAAATGTGAAAGGTTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATGCTTACCAGAGTTGAAGAAAGTAACCATAAGAGAGTGCATGGAATTGAAGCAGATCATGGAAGAAGACGGGTCCAATCTTCTTTCCATAGATGGAGGCTCTGAAGTAGAGGAGATTATTGGATGTGATAAAGAAACTTCAAAGAATAATTTTACCTTTCCAAATCTTGAAAAACTAAAAATATTTGATTGTGCAAAATTGGAAATAATCTTTCCAAAGTCTGTTTTAAGATGCTTACCAAAGTTGAAGCTTTTGAAGATAAAAAAATGCGGAGAATTAAGACAAATCATTGCAGGGGATAAAAATTTGTCTAATATTCTTTCTCCTCAACCATGCTTCCCAAAACTAGAAGCATTGCATGTTGATGATTGCCACAAGTTGAAAAGATTATTCTCTGGATCTGCTTCTAATGACCTTCCTAATCTTCTTCTTCTGGCCATAAATGGAGCCAATGAAGTAGAAGAGCTTGTTGGATGTAAACAAGGAAAGATTAAAGTTGAGCTTCCAAGACTCAAACTTTTAATATTTATGCAACTACCAAACTTCAGTCAAGAGATTGATTTGCAAAATTTAAAGAATTGCATTGTCTACAAATGTCCAAAACTCTCTTTCACTTCAACAACTACTCTTCGGAAGCTCCATTTAAATTTTCCTTACGAAGATTTCATAAACTCTGAACTTCATATTTGGACATTGGTAGCAGACATATACGAAGAATATTCACAGAGTCACTCACTCAATCTTACTTTTTCAATTTGTAATACACAGGAGATTGAGGACGAAGGAAATGAGAGCATTGAATCTTCATCCACTGGAGTTGAAGACACTAGCATTGGAGATGCTGTTGAAACTCACATCGAGTCTGGTGGCGAGGACATACTTGCACTAGATTCCAAGGTAGTTGAACAAGATGATAAGATGACTGAAGGCAAGCCAGGAATAGTGGCAAGCCAAGGAATCCAAGTACAAGAAGGGTTCAACCTTTTGCATAAACAACAGGGAAGAGATGTTTTTCCTAATAACAACATTGACATTTCTTCAGATATTCGTACAAGATTAGGAGCATATAAACATTTTGTTGATCTGGATGATGCACAGATTTCTCTTCTGGTGGAGGCAATTACTTCATATCCTCATCTCTGGAATGCTTCCAAGAAGTTTAGTGATCGTTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTCTTTCCTTCAGAAGGAAAGTGTCCATAGTGTTATTCCTCAAAGAGAAAAAGAGTTCTATAAACTATGTGAAGAAGCTATTTTTGTTGGATTTGAGAGTTCATGGGTAGAGGAAATGCGTCAACGTGTTGTGGCCAGGGATCCTAAGTTGGGAGAGGACATTGCTAAGAGACAAATAGATGAGAATGCTAAGAGGTATAGTAGTGGGGACATGATAGAAGATTCCCAGGCTGTTGAAGAAGGTGATGGGCCTAAGATTAGATTGGAAGAAGGTTCTGACTTGGTTGATAAAGAAGGTGAAATAGGTGTTCTTTCTAATGACCACATTTTGGCTCCGAGAAATGAAGAACCAGAGCAAGAATTTGGTGCAGAAGTTTTCACTTCAGAAATACCAAGAATAGCAACACCCTCAAATGCATTGGTGGACACACAGCTGACTAGTGAACCGTGTCAGATGAAGCAGAAAAAACCAGTTGGTGAAATTCCTAAGAGTATTGAGCAAGTTGATTTAGAGGAAACCATAGCAAAGAACACCAATATGGCAGCTTCATCAATTCTTTCCGAATCCGCGACCTCTAAGTTGGATCCATCAGTTACTTTACTAAGTAAATCACATCCATATCAAGTAAGTTTATTTTATGCAATTCACATTTCTAAGATATTCGGTCAGAATAAAAATGGTATTAAGAAACTCAATACTTTGCAACTACTGTGGCTTGTTGTTAACGTCTTTTCTTTTGTATTTTCTTCTTATTCCACCCAGGGAGAAATTAATAGCAGCCAAATTGAGGCACGCATTGCTAAAGAAAGTGAAGGCCATCCTAAAATCATTCAAGACTTTGGGGCCGATGATATCAGGAGTTTATTTGCACCAGTTGTTGTGGGGAAAGAGGGTGAAGATAAGCTAGTTGGAAAGACCCTTTCTGAGTTAGAAAAGTATCTGAAGATGTCTCTGAAGGATATAGTTAGCTCTGAGACTAACAGCCTTTGCCTTTTGTCTGCTCTTAATTTCCTGTCCAACCTTCCTTTCAAAGATGTGAGAGTATCAGATGGACTCAAACATATTATAAACACTATGCACCGAGACTTCCCAAGCATTTTATGCTCCTTTAAGCAAGGCTTTGCCACCATTGACAAATTGGCAGAACTTGAAGCTCGTGCGAATGAGGTGACCATTAAAAAGAATTTCTATGATGAACTTCAACGGAAGGAAGTAGTTTTGAAGGAACAAATCATTAGGCTGAAGGAAGAAATAAGAGTTTGTGAGGTTGCTTTATCATCCCTGGAGGAGGAAAAAAGTAAATGCATTGCGGAAACTGTAGAATACAAAACGGAGCTTGAAAATGCAAGGAAAGACAAATCTGAAATGTTGGAGGTGGCTCATAAATGGTCAGTTCTGTGTAGTCAATATGAGCTCAATCGCATGGCTGCTACAAATCCCTCATGA 6816 0.3628 MDCFVGFASSVSRDLVCRALNQLRYLYSFNNFVKKLEQGKDDFIVTRDDVQKSVEDAKRKTRETSGVVVKWLQDATSDIDKVNQLLEEARTKKICCFGYCPNWIWRYRIGKKLAYKFFDLEKFIDQGKKYVSFDRIPTLPSDTLDILSEKWMNFESRQSTYEQLLDAVKNNDVSMIGLYGMGGCGKTTLAMEIRKFVQAEHVFDKVLFVPISSTVEVRRIQEKFASSLQFEFPETEEMQRAQRLCLRLTQEKSVLIILDDVWEKLDFGRIGIPSSEHHKGCKILITTRSEAVCTLMDCQRKIYLPILTDEEAWTLFQNKALISEGSPYTLKNLGRLISNECKGLPVAIAAVACSLKGKPETVWSVSLNKLRHSKPLNIEKGLTDPYKCLRLSYDNLDDKEAESLFLLCSVFPEDSEIQVEVLTRCAIGLGVAGEAHSYEEARSEVIAAKFKLVSCCLLLDADDEWVKMHDIVRDVAHIIAKNENKMIKCELEKDVRVEQNSVRYLWCAKIPNDLDCSNLEFLFLQTKMKEFDGIFKRMGILKVLILVNDGYRKTRLSKISFKTLTNLRYLFIQNYELSDFSFLGGMKNLQSLSLCYCLLPPFPELQTDFAITLKLLELRGCDIEVKNFEVMKRIPLLEELYIIDIQGKWYANSKDNIEFFKTFSIPETLQRYGIVLGSRYFDHYSNGDIYIDDRTLLLNHFDISNEVIKGLAKTAKDLFVGNVHGGAKNMIPDIFEIEGGGLNELNTLEILDSEELECLIDTRSQSTEVVSLFSKLQTLRIDNMKNLRVIWHCFLPANGSFENLEKLYLSYCPRLTSLFTYVVARSLVKLKILKIARCDELKHILTYDEKSEDEFTSGHPVQIFQNLQEVEVYSCPELKHIFSTNIVGGLTQLKVLEIKECDKLEQIIGDIVPLTEQDRKEELDEIVEEGTLSSLASLKIKRCGKLGSIFTASIAKTLTSLEDLFIEDCKSLKDIVTHERINKNQEESIVEDDYDCQSDISIFQSLKKLHISNCDLLEGIFPVSFVGELNDITNKDAADLENFFSRNNAQIKLPALQVLELGRIRDRTIVGSYDVICKSLRTLSLDIGRYVGFFSINCSTDASEATKTDFIVIKISNSDFIPPVVECLSKQPRDLNLIMTNNIREIELKGFDKSRYLFKLTIASSLMMLEILRIEKCEGLEYIIDTDDEYGKENMKAIFPNLKQLSVYDCFRLKYMFGQYHVTNKDYEEIHIQFSALEILSLDDLPNFVSICSTNTVTVTWPSLKDFRCSKCLYPFYGSDSCLMIPTNSREPIMTSTKDPKGIQNHLHTLESLNISHCDVECILFLNEDEMSQQVSLRLEKLELYNLAQMTYIWVGPNNSLTLQHLTRLKIWKCERLEVIFPKSVVRCLPELKKVTIRECMELKQIMEEDGSNLLSIDGGSEVEEIIGCDKETSKNNFTFPNLEKLKIFDCAKLEIIFPKSVLRCLPKLKLLKIKKCGELRQIIAGDKNLSNILSPQPCFPKLEALHVDDCHKLKRLFSGSASNDLPNLLLLAINGANEVEELVGCKQGKIKVELPRLKLLIFMQLPNFSQEIDLQNLKNCIVYKCPKLSFTSTTTLRKLHLNFPYEDFINSELHIWTLVADIYEEYSQSHSLNLTFSICNTQEIEDEGNESIESSSTGVEDTSIGDAVETHIESGGEDILALDSKVVEQDDKMTEGKPGIVASQGIQVQEGFNLLHKQQGRDVFPNNNIDISSDIRTRLGAYKHFVDLDDAQISLLVEAITSYPHLWNASKKFSDRFQAWRLKILADMLSFLQKESVHSVIPQREKEFYKLCEEAIFVGFESSWVEEMRQRVVARDPKLGEDIAKRQIDENAKRYSSGDMIEDSQAVEEGDGPKIRLEEGSDLVDKEGEIGVLSNDHILAPRNEEPEQEFGAEVFTSEIPRIATPSNALVDTQLTSEPCQMKQKKPVGEIPKSIEQVDLEETIAKNTNMAASSILSESATSKLDPSVTLLSKSHPYQVSLFYAIHISKIFGQNKNGIKKLNTLQLLWLVVNVFSFVFSSYSTQGEINSSQIEARIAKESEGHPKIIQDFGADDIRSLFAPVVVGKEGEDKLVGKTLSELEKYLKMSLKDIVSSETNSLCLLSALNFLSNLPFKDVRVSDGLKHIINTMHRDFPSILCSFKQGFATIDKLAELEARANEVTIKKNFYDELQRKEVVLKEQIIRLKEEIRVCEVALSSLEEEKSKCIAETVEYKTELENARKDKSEMLEVAHKWSVLCSQYELNRMAATNPS 2271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00049 2271 PRINTS Disease resistance protein signature 888 904 - -
Vimu11g00049 2271 PRINTS Disease resistance protein signature 248 262 - -
Vimu11g00049 2271 PRINTS Disease resistance protein signature 175 190 - -
Vimu11g00049 2271 PRINTS Disease resistance protein signature 341 355 - -
Vimu11g00049 2271 SUPERFAMILY L domain-like 467 1023 - -
Vimu11g00049 2271 Gene3D - 145 303 IPR027417 -
Vimu11g00049 2271 MobiDBLite consensus disorder prediction 1855 1874 - -
Vimu11g00049 2271 SUPERFAMILY RNI-like 1302 1603 - -
Vimu11g00049 2271 Coils Coil 2170 2221 - -
Vimu11g00049 2271 Coils Coil 72 92 - -
Vimu11g00049 2271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 407 IPR027417 -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 1292 1416 IPR032675 -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 852 992 IPR032675 -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 698 851 IPR032675 -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 1417 1552 IPR032675 -
Vimu11g00049 2271 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1302 1455 - -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 996 1241 IPR032675 -
Vimu11g00049 2271 Gene3D - 307 391 IPR042197 -
Vimu11g00049 2271 Gene3D Ribonuclease Inhibitor 493 666 IPR032675 -
Vimu11g00049 2271 FunFam Probable disease resistance protein At1g61300 152 301 - -
Vimu11g00049 2271 Gene3D - 392 478 IPR036388 -
Vimu11g00049 2271 Pfam NB-ARC domain 162 393 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00049 Vimu-Chr11 458650 468215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00049 172 577 WRKY Transcription Factor Family AT5G45050 25.112 3.20e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00049 - - vra:106753628 3488.74