Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00041 ATGGGTTCTAACTCCAAGGAAGTAGAAAAGGTGGATGATGCATACCGTTCTGCTGTGCTGCTGTGTTTCAGCAGAGTCCTCCCTGCAATTCTAAACGCTGCTATAGACATCAATCTGTTTGATGTCATAGCAAAGGCAAAGGGTTCTTCCGATGACTCGAGTTTTTCTGCTTCTGAGATTGCTTCTTTGCTTCCAAATCAACACCCAGAATTGGCTAATAGGCTTGAAAGAATGTTGCCACTTTTGGTCAGTTACTCTCTTTTACGTTGCTCTATTCGCACCAATCAAGATGGTAAGAGAGAAAGAGTTTATTCTCTCACACCAGTTGGACAATACTTTGCTTATGATCATCAAGGAATCTCTCTCGCTCCACTCTCAACCTTACTTCATCGCGGATTTCATGACCTTTGGAAGGATGCAAAAGGAGCATTTCTGGACCCTAATTGCAGTAACCATTTTGAAAGTGTCTTTGGAATGCTGTCATATCAATATATGGAGAAAGATGCAGAGTTGAACCAAATGTTCTACAAAGCAATGGCTCATGCCGGTCCAATAGAAGTGAAAAGAGTACTCAAAGTATATAAAGGATTTGAGGGGTTGTCAACACTGGTTGATGTAGGAGGTGGAGTAGGAGAGACCCTGAAACTCATTCTCTCTGCATACCCTTCAATCAAAGGAATTAACTTTGATTTACCTCAGATGATTCAAGATGCACCTCCTCATCCAGGTGTGGAGCATGTGGGAGGAGATATGTTTGAAAGTGTTCCAAGTGGGGATGCCATTTTAGTGAAGTCTATATGTCACAACTGGGCAGATGAAGATTGTATAAAATTTTTAAGAAACTGTCACAAAGCTTTGCCAGCACATGGGAAAGTGATTGTTTTGGATTATATAATTCCAGAGATTCCCGATTCAAGTGATGCATCTAAACATAGTACTATTGTGGACAATCACATGCTTTTAGCACATGGAGGGAGGGAAAGAACTGAGAGTGAATTTGAGAACTTGTGCAAGAGCTCTGGTTTTTTCAAGTTTCGTGTTGCATGTAATGACATATCAGCTACTGTGGGAGTGATGGAGTTCTATAAGTAG 1092 0.4103 MGSNSKEVEKVDDAYRSAVLLCFSRVLPAILNAAIDINLFDVIAKAKGSSDDSSFSASEIASLLPNQHPELANRLERMLPLLVSYSLLRCSIRTNQDGKRERVYSLTPVGQYFAYDHQGISLAPLSTLLHRGFHDLWKDAKGAFLDPNCSNHFESVFGMLSYQYMEKDAELNQMFYKAMAHAGPIEVKRVLKVYKGFEGLSTLVDVGGGVGETLKLILSAYPSIKGINFDLPQMIQDAPPHPGVEHVGGDMFESVPSGDAILVKSICHNWADEDCIKFLRNCHKALPAHGKVIVLDYIIPEIPDSSDASKHSTIVDNHMLLAHGGRERTESEFENLCKSSGFFKFRVACNDISATVGVMEFYK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00041 363 CDD AdoMet_MTases 202 299 - -
Vimu11g00041 363 Gene3D Vaccinia Virus protein VP39 172 350 IPR029063 -
Vimu11g00041 363 FunFam Uncharacterized protein 114 363 - -
Vimu11g00041 363 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Vimu11g00041 363 Pfam Dimerisation domain 30 83 IPR012967 GO:0046983
Vimu11g00041 363 PANTHER O-METHYLTRANSFERASE 23 348 IPR016461 GO:0008168
Vimu11g00041 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 363 IPR016461 GO:0008168
Vimu11g00041 363 FunFam Caffeic acid 3-O-methyltransferase 2 113 - -
Vimu11g00041 363 Gene3D - 26 190 IPR036388 -
Vimu11g00041 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 350 IPR029063 -
Vimu11g00041 363 Pfam O-methyltransferase domain 137 342 IPR001077 GO:0008171
Vimu11g00041 363 SUPERFAMILY "Winged helix" DNA-binding domain 12 116 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00041 Vimu-Chr11 409762 412008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00041 12 363 Monolignol Biosynthesis Gene Families AT5G54160 46.197 8.69e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00041 - - gmx:106794104 551.977