Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00031 AAACTTGCTAGTGATATATATATAAGTTGGCCTTTTCTTGGTATGAAGATTGGAAGATTCAAATGGGAGTCACCCCGGGAAAGTGGCGTTGCAGAAGAGGCTTCACAATCACGTGGCTTTTCACAAGAAGATGATCCAACCTATGCTAACCCCTCCTCTGCAACTATCTCCCTCTATTCTCTTCTCTTGCTTCTGTATCACTCTTTTCCTTCTATGTCTCAAGCCAATTGTCTGCACAATTGTCATATCAATCATGTCCTCTCTGACACGTATGCTGTCAAGTCTCTTCCTCTACAAGTTTATTCGAGATTGGGTGGTTACTATGGATCATCATTTGCGGATGATGATGCATGGTATGGAAAAAAAAGGATCAAGGGAGAAGACAGATTGAGGACACTTTCTGAGATTGATCACGTCAAAACTCTCATCACATGCACCAAGAATTTGCAAGACATGGCACTGATTATTCTTTTCAATGCACAGGCTGGTCAACTCAATCTTGTAGTGGGGTCCCATATTTGGGTAGAGGACCCTGAGTTAGCTTGGATAGATGGAGAAATCCAGGAATCTAAAAAGGACGAGGTCACGATTCTCTTTGAATCGGGCACGAGGGTTGTGAGCAAATCCGCTAACATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGAAGATATGACAAGACTGGCATATCTGCACGAACCAGGAGTTCTTCAGAATTTGCATATTCGATATTCCATAAATGAGATCTATACTTACACGGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTAACTGAAACTAGTACCATGGCAAAGTATAAAGCTGCGGCTTTTGGTGAGCAGAGCCCGCATCCTTTTGCAATTGCAAGTTCTGCATATAGAAAGATGATAAACGAAGAAAAAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGCAAGACAGAGAGTACAAAGATGCTTATGCATTATCTTGCTTTTTTGGGAGGGAGAGCAGCAACTGAAGGACGGTCTGTAGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAATGCAAAGACAGTTAGGAATAATAATTCTAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGCTGTGTGCTGCACCAAAAGAGGAATCTGGTAAGTACAAATTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATTGCATTGAGTTGGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAGGAGAGCTATGGAGGTTGTTGGGATCAGTGGAGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAGTTTATCAAGGGTTCGGAAGATGAGTTGGATTCCTCTCAACCCAAGGATGAAAAATCCATTTACCACCTAAAAACAGCAGCCGAGCTTTTGATGTGTGACGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAACTGCTGCAGCCCTCAGCAGAGATGCATTGGCTAAAATAGTCTATTCAAGGCTTTTTGACTGGATTGTGTGCAAGATAAACAACACTATTGGGCAAGATCCAGATTCAACTAAATTGATTGGAGTTCTTGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAGCATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTAATTGGAGTTATATTGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCTGGTGGTGTTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTTTACCAAACCTTTAAAGACAACAAACGCTTCAGCAAGCCGAAGTTGTCTCGCACAGACTTTACCATTAACCACTATGCTGGTGATGTCACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCGAAGTGCTCCTTTGTTTCAGGGTTGTTTCCTCCTTTACCCGAGGAAACTACAAAATCGACAAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAACGCTACCGAGCCTCACTATATTCGTTGTGTAAAGCCAAATAATCTTCTCAAGCCTGGGATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGTCCTTTGATGAATTTGTTCAGCGGTTTACCATCCTGGAACCTAAAGTTCTGAAATCATGCCCTGATGAGGTGACGGCTTGCAAGAGGCTTCTAGATAGAGCGAACCTTAAAGACTATCAGATTGGAAAGACAAAAGTGTTTCTAAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTAGGAATGTCTGCAAGTGTTATTCAGAGAAAAGTCCGCACGTTTCTTTGTCGGAAACATTACGTCTTATTGCAGTTGTCGGCCGTAGAACTTCAAAGGGTTGCGAAAGGACAACTTGCACGACGTCAGTATGAATACATGAGGAGGGAAGCCGCTTCTATAAAAATTCAGAAAGATTGCCGCATGTATATTTCCAGAAAGTCTTACAAAACTAAATATGCCTCAGCGATTTGTATTCAAACTGGAATGCGAGGGATGGCTGCTAGAAATGATCTTAGCTTCAGGAGACGGACAAAAGCTGCAACTATTATTCAGGCTGCCAGGGAAGCTAAAGCACTTGAAGAGGCAAAAAATAATCTGGAAAAGCAAGTCAAAGAGTTAGCTTCAAGTCTAGAAGAAGAAAAGGCGATGAGGTGGTATTATTTCACCAACATTCTAAATGTTTCGGTTCATTGTGATATTGAGGAAGCCAAGACACGGGAAAATGAAAAACTACAGCAAGCTTTGCAAGAGAAGGAGCTTCGATTCCAAGAAATTAAGGAAGCCAATACAAGGGAAACTGAAAAACTACAAGAGGCTTTGAAAGAAATGGAGCTTCAGTTCCAAGAAATTAAGGAAGCCAAGACACAGGAAACTGAAAAACTACAACATGCTTTGAAAGAGATGGAGCTTCAGTTCCAAGAAATTAAAGAAGGCAAGGGACAGGAAACTGAAAAACTACAAAATGCTTTGAAAGAAATGGAGCTTCAGTTCCAAGAAATTAATGAATCCAAGACACAGGAAACTGAAAAACTACAAAATGCTTTGAAAGAGATGGAGCTTCAGTTCCAAGAAATTCAGGAAGCCAAGACACAGGAAACTGAAAAACTACAACATGCTTTGAAAGAGATGGAGCTTCAGCTCCAGGAAACTAAGGCAGCGCTCATTCAGGAACAAGAAGCTGCCAAGAAATTAGCTGATCAAAACCCAAGTTTACAGGAGAAATCTGTTAATGATGTTGACAATGAATTGATCAGTAAGCTTACAGCAGAAAATGGTCAACTCAAGGAACTGGTTAATTCTTTGGAAAAGAAAACTTTGCAGGAGATACCTGCTAATGTTACTGACAATGAGTTGATCAATAAACTTACTTCAGAAAATGAACATCTTAAGGAACGGATTAATTCATTGGAAAAGAAAACTGTTCAGGAGTTTCCAGTTAACCTTACTGACAATGAGTTGATCAATAAACTTACTTCAGAAAATGAACACCTTAAGGAACGGATTAATCTTACTGACAATGAGTTGATCAATAAACTTACTTCAGAAAATGAACATCTTAAGGAACGGATTAATTCATTGGAAAAGAAAAGGGTACAGGAGTTTCCTGCTGATGTTACTGAAAATGAGTTGATCAATAAACTTGACTTCGAAAAGGAAAATGTTAAGGAACTGACAAATTCTTTGGAAAAGAAAACTCTACAGGAGTCTCCTGTTAACGCTACCGACAATGAGTTTATTAGTAAACTTAAGAAAGAAAACGAACAGCTTAAGGAAAAAATTGATGAAACAGAGAGGAAATATGAAGAATGTAACAAGATTAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGATAAAGACAAATATGCAGAGGCTTGAAGAAAAAGTGTCCGATATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAACATTGTTGAGTTCATCATCATCCAGAAGAATGTCAGGAAAGTTTTCCCCTGCTACAGTTCCGCCTGTGGAAAATGGCCAGGCGCAGCAGACTTCTGTTCCTGCAAAAACATTTGGTTCAGAGGATAGTAAAGGAAGGAGATCTCTTATGGAGAGACATCAAGAGAGCATAGATATTCTTTTCAAATGTGTGACAAAAGATCTCGGATTCTGTGAAGGAAAACCTGTTGCAGCATTTACCCTTTATAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAAACCAGCATATTTGATCGTCTTATTCAGATTATTGGTTCTGAAATAGAGGATCCAGACAAAAATGATTGTATGGCTTATTGGCTATCCAACACATCTTCTTTGTTTTTCCATCTTCATCGATGTTTAAGAGTACCAACAGCACGGAAACCGCCCACTCCGACATCATTTTTCGGGAGGATGACCCAGGGTTTTCGCTCATCTAATAGTCTTTCCAGCAGTGCTTTTGATGTAGTGCATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTTAAGCAACAGCTTGCAGCTTACGTGGAAAAAATATATGGAATCGTTCGAGAAAATTTCAAGGCAGATTTGACACCTCTGCTTTCTTCTTGCATTAAGGTCCCTACTGTTCTAGTTCACAAGCTATTTAATCAAATTTTTCAATACATCAATGTGGAACTCTTTAATAGCATTCTTTTGCATGAAGAATGCTGCACATTCAAACATGGAGAATATATAAAATCAGGTTTGGCAGAACTAGAAGGATGGTGTACTGAAGCAACGGAAGAGTACATTGGCTCATCTTGGGATGAACTCAAACATGCAACACAAGCAGTTAAATTCTTGGTTGCAGAAAAGAAGGAAGAGCTATCTTATGATGATCTTACAAACGACCTATGCCCCGTCTTGAGTGCTCAACAACTTTATAGAATATGTACACTTTACTCTGATGATGATGATGACAAAAAACAAAGTGTATCAACAGATGTAACTACTAGATTGAAGCTTCTGATGACAGATGATGCAGATGAAGATAGTAAAACCTACTTGCTGGAGGACAACTCAAGCCATCCTATCATAGTTGAAGAGATCCCTTCTTCTCAAGATAAGAGCACTCCAAAAGTAAAGCCTCCTGCAGAACTTCTTGAGAATGCAAACTTCCAATTTCTGCATGACTATTACTAG 5613 0.3955 KLASDIYISWPFLGMKIGRFKWESPRESGVAEEASQSRGFSQEDDPTYANPSSATISLYSLLLLLYHSFPSMSQANCLHNCHINHVLSDTYAVKSLPLQVYSRLGGYYGSSFADDDAWYGKKRIKGEDRLRTLSEIDHVKTLITCTKNLQDMALIILFNAQAGQLNLVVGSHIWVEDPELAWIDGEIQESKKDEVTILFESGTRVVSKSANMYPKDPEFPPAGVEDMTRLAYLHEPGVLQNLHIRYSINEIYTYTGNILIAVNPFQRLPHLTETSTMAKYKAAAFGEQSPHPFAIASSAYRKMINEEKSQSILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKLGDPRKFHYLNQSNCIELDGLDDSKEYLATRRAMEVVGISGDEQDAIFRIVAAVLHLGNIEFIKGSEDELDSSQPKDEKSIYHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPTAAALSRDALAKIVYSRLFDWIVCKINNTIGQDPDSTKLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKSFDEFVQRFTILEPKVLKSCPDEVTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGMSASVIQRKVRTFLCRKHYVLLQLSAVELQRVAKGQLARRQYEYMRREAASIKIQKDCRMYISRKSYKTKYASAICIQTGMRGMAARNDLSFRRRTKAATIIQAAREAKALEEAKNNLEKQVKELASSLEEEKAMRWYYFTNILNVSVHCDIEEAKTRENEKLQQALQEKELRFQEIKEANTRETEKLQEALKEMELQFQEIKEAKTQETEKLQHALKEMELQFQEIKEGKGQETEKLQNALKEMELQFQEINESKTQETEKLQNALKEMELQFQEIQEAKTQETEKLQHALKEMELQLQETKAALIQEQEAAKKLADQNPSLQEKSVNDVDNELISKLTAENGQLKELVNSLEKKTLQEIPANVTDNELINKLTSENEHLKERINSLEKKTVQEFPVNLTDNELINKLTSENEHLKERINLTDNELINKLTSENEHLKERINSLEKKRVQEFPADVTENELINKLDFEKENVKELTNSLEKKTLQESPVNATDNEFISKLKKENEQLKEKIDETERKYEECNKISEERMNQIIETESKMIEIKTNMQRLEEKVSDMETENQVLRQQTLLSSSSSRRMSGKFSPATVPPVENGQAQQTSVPAKTFGSEDSKGRRSLMERHQESIDILFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQIIGSEIEDPDKNDCMAYWLSNTSSLFFHLHRCLRVPTARKPPTPTSFFGRMTQGFRSSNSLSSSAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKADLTPLLSSCIKVPTVLVHKLFNQIFQYINVELFNSILLHEECCTFKHGEYIKSGLAELEGWCTEATEEYIGSSWDELKHATQAVKFLVAEKKEELSYDDLTNDLCPVLSAQQLYRICTLYSDDDDDKKQSVSTDVTTRLKLLMTDDADEDSKTYLLEDNSSHPIIVEEIPSSQDKSTPKVKPPAELLENANFQFLHDYY 1870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00031 1870 Gene3D - 601 785 - -
Vimu11g00031 1870 Pfam IQ calmodulin-binding motif 947 966 IPR000048 GO:0005515
Vimu11g00031 1870 Pfam IQ calmodulin-binding motif 900 917 IPR000048 GO:0005515
Vimu11g00031 1870 Coils Coil 1051 1121 - -
Vimu11g00031 1870 ProSiteProfiles Dilute domain profile. 1565 1816 IPR002710 -
Vimu11g00031 1870 Coils Coil 1304 1324 - -
Vimu11g00031 1870 ProSiteProfiles Myosin motor domain profile. 222 894 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 Gene3D - 829 892 - -
Vimu11g00031 1870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 948 IPR027417 -
Vimu11g00031 1870 Coils Coil 1269 1289 - -
Vimu11g00031 1870 Gene3D - 412 470 - -
Vimu11g00031 1870 Gene3D Myosin VI head, motor domain, U50 subdomain 472 763 - -
Vimu11g00031 1870 Coils Coil 1396 1423 - -
Vimu11g00031 1870 Coils Coil 999 1033 - -
Vimu11g00031 1870 MobiDBLite consensus disorder prediction 1487 1503 - -
Vimu11g00031 1870 Gene3D - 947 999 - -
Vimu11g00031 1870 Gene3D - 897 946 - -
Vimu11g00031 1870 CDD MYSc_Myo11 236 882 IPR036018 -
Vimu11g00031 1870 FunFam Myosin 2 472 587 - -
Vimu11g00031 1870 SMART iq_5 896 918 IPR000048 GO:0005515
Vimu11g00031 1870 SMART iq_5 944 966 IPR000048 GO:0005515
Vimu11g00031 1870 SMART iq_5 919 941 IPR000048 GO:0005515
Vimu11g00031 1870 SMART iq_5 967 989 IPR000048 GO:0005515
Vimu11g00031 1870 Gene3D Kinesin motor domain 225 824 IPR036961 -
Vimu11g00031 1870 ProSiteProfiles IQ motif profile. 968 997 IPR000048 GO:0005515
Vimu11g00031 1870 SMART DIL_2 1690 1797 IPR002710 -
Vimu11g00031 1870 FunFam Myosin heavy chain 412 467 - -
Vimu11g00031 1870 Coils Coil 1431 1465 - -
Vimu11g00031 1870 Coils Coil 1126 1217 - -
Vimu11g00031 1870 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 168 217 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 FunFam unconventional myosin-Va 947 995 - -
Vimu11g00031 1870 Pfam Myosin N-terminal SH3-like domain 170 208 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 Coils Coil 1234 1254 - -
Vimu11g00031 1870 Pfam DIL domain 1691 1794 IPR002710 -
Vimu11g00031 1870 ProSiteProfiles IQ motif profile. 945 971 IPR000048 GO:0005515
Vimu11g00031 1870 PANTHER MYOSIN 1378 1804 - -
Vimu11g00031 1870 Pfam Myosin head (motor domain) 224 882 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 MobiDBLite consensus disorder prediction 1466 1509 - -
Vimu11g00031 1870 Coils Coil 1357 1384 - -
Vimu11g00031 1870 Coils Coil 1326 1346 - -
Vimu11g00031 1870 SMART MYSc_2a 216 895 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 PRINTS Myosin heavy chain signature 356 383 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 PRINTS Myosin heavy chain signature 644 672 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 PRINTS Myosin heavy chain signature 252 271 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 PRINTS Myosin heavy chain signature 309 334 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu11g00031 1870 FunFam Class V myosin 601 742 - -
Vimu11g00031 1870 ProSiteProfiles IQ motif profile. 920 949 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00031 Vimu-Chr11 282355 302219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00031 1683 1868 Myosins gene family AT1G04600 55.080 8.00e-53 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00031 K10357 - gmx:100791031 2306.95