Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu11g00030 | ATGAAGATTGGAAGATTCAAATGGGAGTCACCCCGGGAAAGTGGCGTTGCAGAAGAGGCTTCACAATCACGTGGCTTTTCACAAGAAGATGATCCAACCTATGCTAACCCCTCCTCTGCAACTATCTCCCTCTATTCTCTTCTCTTGCTTCTGTATCACTCTTTTCCTTCTATGTCTCAAGCCAATTGTCTGGATCATCATTTGCGGATGATGATGCATGACACGCACCAGACAATTGGCTTGAGACATAGAAGGAAAAGAGTGATACAGAAGCAAGAGAAGAGAATAGAGGGAGATAGTTGCAGAGGAGGGGTTAGCATAGATGTGGATGCACCGTTGGATTCGCGTAGAAAAATAACTAGAAAGGTGTACCAAGGCACTGTGGCACTGATGATTCTTTTGAATGCACAGGCTGATCAAGTCAATTTTGTAGTGGGGTCCCATGTTTGGGTAGAGGACCCTGAATTAGCTTGGATAGATGGAGAAATTCAGGAATCTAACAAAGACGAGGTCACGATCCTTTTTGAATCGGACACGAGGGTTTTGAGAAAATCCGCTAACATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGAAGATATGACAAGACTGGCGTATCTGCACGAACCAGGACTTCTTCAGAATTTGCAAATTCGATATTCCATAAATGAGATTTATACATACACGGGAAGTATATTGATAGCTGTAAACCCTTTTCAAAAGTTACCTCATATGAGTGGAACTAGTACCATGGAAAAGTATAAATGTGCGGCCTTCGGTGAGCAGAGCCCGCATCCTTTTGCTATTGCAAGTTCTGCATATAGTGGAGAAAGTGGAGCTGGAAAAACTGAAAGTACAAAGATGCTTATGCAGTATCTTGCTTTTATTGGAGGGAGAGCAGAAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAATGCAAAGACAGTTAGGAATAATAATTCTAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAAGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGCTGTGTGCTGCACCAAAAGAGGAATCTGGTAAGTACAAATTGGGAGATCCACGAAAATTCCATTACCTTAATCAATCAAATAGCATTGAGCTGGATGGGTTGGATGATTCTAAGGAGTACTTTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCTCTGAGGAGCAGGATGCTATATTTCGAGTAGTAGCTGCAATACTTCATTTAGGAAACATTGATTTTGTTAAGGGAGTGGAAGAGGTGTTTGATTCCTGTCAGCCCAAGGATGAAAAATCCTATTTCCACCTAAAAACCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGAGTCTTTCTGCAAAAGTATTATAATGACTCGTGGTGACACCATAACAAAATCACTTGATCCAAATTCTGCAGCTCTCAGAAGAGATTCATTAGCTAAAATAATTTATTCAAGGCTTTTTGACTGGATTATGTGCAAGATAAATGACACTATTGGGCAAGATCCAAAGTCAAATAGTTTGATCGGAGTTCTAGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTCTGTATCAATTTGGCAAATGAGAAATTACAGCAACATTTCAACCAGCATATCTTCAAAATGGAGCAAGAGGAATATAAAAGGGAAGAGATTGATTGGAGTTATATTGAGTTTGTGGATAATCAAGATGTTATTGATCTCATAGAGAAGAAACCAGTTGGCATTATTTCTCTCCTGGATGAGGCCTGCATGTTTCCAAGATCAACGCACGAAACATTTGCTGAAAAGCTGTATCAAACCTTCAAAGGCAACAAACGCTTCAACAAGCCAAAGTTCTCTCGCACTGACTTCACCATTAAGCATTATGCTGGTGATGTCACTTATCAAACTGATCTTTTCCTCGATAAAAATAAAGACTACGCTATTCCAGAGCATGCTGACATACTCAATGCCTCCAAGTGCTCCTTTGTTTCAGGGTTGTTCCCACCTTTACCTGAGGATGCTACAAAATCGAAAAAGTTCTCTTCAGTTGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAATGCTACCGAGCCACACTACATTCGTTGTGTAAAGCCAAATCATCTTCTGAAGCCAGGGATATTCGGGAACAAAATTGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGAAATTTGATGAATTTGTTCAGAGGTTTAGCATCCTAGAACCTGAGGTTCTGAAAGAATGCCCTAATAGGAAGTCTGCTTGCAAGAGGATTCTAGATAGAGTGAATCTTAAAGATTATCAGATTGGAAAGACAAAAGTCTTTCTGAGAGCAAGTCAAATAGCAGAACTAGATGCATGTCGTGCAGAGGTCCTGGGAAGATCTGCAAGTGTCATTCAGAGGAAAGTCCGCACGTTTCTCTGTCAGAAACAGTTCATCTCATTGCTGTTGTCTACCATAGAACTTCAAAGGGTTGTGAAAGGGCAACTCGCACGACATCAGTATGAATGCATGAGGAGAGAAGCAGCTTCTTTGAAAATTCAGAAAGATTTCCTAATGCATGTTTCCAGAAAAGCTTACAAAAGTATTTATGCCTCAGCTATTTATATTCAAATTGGATTGAGAGGGATGGTTGCTAGAAATGACCTTAGATTCAGAAAACGATCACAAGCAGCAGCTGTTATACAGGGTCTATATAGAGGTTATACTGCTCGTACTTATTTCCAGAGGTTAAAGAAAGCAACAATTTTCGTAGTGTGTTCCAGAAAGAGAACAATGGCTCGGAGAGAACTTCGAAAGCTTAAAATGGCAGCCAAAGAAACAAAGGCACTTGAAGCTGCAAAAAATAATCTGGCAAAGAAAGTCAAAGATTTAATTTCGTTTCTAGAGGAAGAGAAGACAATGAGGGTAATTTATTTATTTATAGTAAATTAA | 3135 | 0.4026 | MKIGRFKWESPRESGVAEEASQSRGFSQEDDPTYANPSSATISLYSLLLLLYHSFPSMSQANCLDHHLRMMMHDTHQTIGLRHRRKRVIQKQEKRIEGDSCRGGVSIDVDAPLDSRRKITRKVYQGTVALMILLNAQADQVNFVVGSHVWVEDPELAWIDGEIQESNKDEVTILFESDTRVLRKSANMYPKDPEFPPAGVEDMTRLAYLHEPGLLQNLQIRYSINEIYTYTGSILIAVNPFQKLPHMSGTSTMEKYKCAAFGEQSPHPFAIASSAYSGESGAGKTESTKMLMQYLAFIGGRAETEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKLGDPRKFHYLNQSNSIELDGLDDSKEYFATKRAMEVVGISSEEQDAIFRVVAAILHLGNIDFVKGVEEVFDSCQPKDEKSYFHLKTAAELLMCDEKSLEESFCKSIIMTRGDTITKSLDPNSAALRRDSLAKIIYSRLFDWIMCKINDTIGQDPKSNSLIGVLDIYGFESFKTNSFEQFCINLANEKLQQHFNQHIFKMEQEEYKREEIDWSYIEFVDNQDVIDLIEKKPVGIISLLDEACMFPRSTHETFAEKLYQTFKGNKRFNKPKFSRTDFTIKHYAGDVTYQTDLFLDKNKDYAIPEHADILNASKCSFVSGLFPPLPEDATKSKKFSSVATQFKLQLQSLLETLNATEPHYIRCVKPNHLLKPGIFGNKIVLQQLRCGGVMEAIRISCAGYPTRKKFDEFVQRFSILEPEVLKECPNRKSACKRILDRVNLKDYQIGKTKVFLRASQIAELDACRAEVLGRSASVIQRKVRTFLCQKQFISLLLSTIELQRVVKGQLARHQYECMRREAASLKIQKDFLMHVSRKAYKSIYASAIYIQIGLRGMVARNDLRFRKRSQAAAVIQGLYRGYTARTYFQRLKKATIFVVCSRKRTMARRELRKLKMAAKETKALEAAKNNLAKKVKDLISFLEEEKTMRVIYLFIVN | 1044 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu11g00030 | 1044 | ProSiteProfiles | IQ motif profile. | 907 | 933 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | FunFam | Myosin heavy chain | 374 | 429 | - | - | |
| Vimu11g00030 | 1044 | Pfam | Myosin head (motor domain) | 200 | 844 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 144 | 193 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 910 | 1007 | IPR027417 | - | |
| Vimu11g00030 | 1044 | SMART | iq_5 | 929 | 951 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | SMART | iq_5 | 881 | 903 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | SMART | iq_5 | 858 | 880 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | SMART | iq_5 | 954 | 976 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | SMART | iq_5 | 906 | 928 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | CDD | MYSc_Myo11 | 212 | 844 | IPR036018 | - | |
| Vimu11g00030 | 1044 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 434 | 725 | - | - | |
| Vimu11g00030 | 1044 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Vimu11g00030 | 1044 | Coils | Coil | 1001 | 1021 | - | - | |
| Vimu11g00030 | 1044 | ProSiteProfiles | IQ motif profile. | 885 | 911 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | FunFam | unconventional myosin-Va | 909 | 957 | - | - | |
| Vimu11g00030 | 1044 | ProSiteProfiles | IQ motif profile. | 955 | 982 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | Gene3D | Kinesin motor domain | 201 | 786 | IPR036961 | - | |
| Vimu11g00030 | 1044 | Gene3D | - | 374 | 432 | - | - | |
| Vimu11g00030 | 1044 | PANTHER | MYOSIN | 190 | 1018 | - | - | |
| Vimu11g00030 | 1044 | Pfam | Myosin N-terminal SH3-like domain | 146 | 181 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | SMART | MYSc_2a | 192 | 857 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | Gene3D | - | 859 | 911 | - | - | |
| Vimu11g00030 | 1044 | ProSiteProfiles | Myosin motor domain profile. | 198 | 856 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | FunFam | Class V myosin | 563 | 700 | - | - | |
| Vimu11g00030 | 1044 | Gene3D | - | 563 | 747 | - | - | |
| Vimu11g00030 | 1044 | MobiDBLite | consensus disorder prediction | 16 | 33 | - | - | |
| Vimu11g00030 | 1044 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 172 | 910 | IPR027417 | - | |
| Vimu11g00030 | 1044 | ProSiteProfiles | IQ motif profile. | 932 | 959 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | Pfam | IQ calmodulin-binding motif | 957 | 976 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | Pfam | IQ calmodulin-binding motif | 861 | 879 | IPR000048 | GO:0005515 | |
| Vimu11g00030 | 1044 | Gene3D | - | 930 | 974 | - | - | |
| Vimu11g00030 | 1044 | Gene3D | - | 790 | 857 | - | - | |
| Vimu11g00030 | 1044 | PRINTS | Myosin heavy chain signature | 228 | 247 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | PRINTS | Myosin heavy chain signature | 318 | 345 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | PRINTS | Myosin heavy chain signature | 271 | 296 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | PRINTS | Myosin heavy chain signature | 553 | 581 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vimu11g00030 | 1044 | PRINTS | Myosin heavy chain signature | 606 | 634 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu11g00030 | Vimu-Chr11 | 272886 | 287821 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu11g00030 | 142 | 1037 | Myosins gene family | AT1G04160 | 68.716 | 0.0 | 1323 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu11g00030 | K10357 | - | gmx:100791031 | 1410.97 |