Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00024 ATGACTCCTCGCGTCGACGATTTCGGCAGTCTCTCCTCCACCGATGATGACGACGATGACGACGGCTTCAAGGAGGATATGGCCGCGCTCTCCCGAGCCTGCAGGATTGTTGTCCCAGGCGCCAAAGATAATTCTGCCGCCGAAGACCGAGTTCCGTTGGAGGACCCGCCCATTGACGCCAGCACCGCCACTGTTTCGGTTGCCACCGACTCGGACTCAGACGGCCAGGACGACCTTGAATGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCTCTATCCGTTCTTCCGCCGCTTGCGCCCTTGGCCTTGTCTGACGATGACGACGACTTGGATGACCTCGAGACGGTGCGCGCCATCATGAGAAGGTTTGGCGACTACAACGAAGGTTTGCGTGAAGATGGAAAGAAAGTGTTGGTTGAGGAGGATCAGACCTCCAGCATGGGCTGTGAGGGTGACGTTGCTAATGGCTCAACCCATAACGAATCCGATGGTGGTAAATTATATCCTATTTCTCAAGATCCTAATGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGAATTTGTTGAGAGTTCTGAACCCGATGCAGGGGAGTCATCTAGATTACCACAGAAAAGATTGAGCTTTCCTCCTGTTGTTCAGTGCTTTATTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTATTAGAGGTAAGTTGATTGAGATTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATCAAAATTCTTAAGGACTTCCAGGCTTCGTGCAATAGAAGAACAGGGAATGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCTGCAAAAAAGTCTTCTGTTCCAAAGAAATCTAAGAAGCAAAAAAGGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCATGCCGCTAATTATAGAATGGTATTGGAAAGATTTCCACTTTCATTAGATCGCAAAAAATGGTCCAAGGTAGAAAGGGAAAATCTTTTGAAGGGAATTAAGCAACAGTTCCAAGAAATGGTGCTTGAACTCTCACTTTCAATTGATAGAACTAGTTCAGAGGAATTGCTTCGGGAGGCAGATGACATGGATAATATAATTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAAATTTTTACCTAAAGTTAATTGGGATCTGATAGCTTCCATGTATGTTGGTGGCCGTACTGGTGCTGAATGTGAATCAAGTTCTTTGATTACTGTTTCACGTTTATTGCCTTTCCATGAAGAATATTTTTCCACTACATTGCAGACACCTATGACTATCACCATCAGAGTCAGTTTGACATTTTTGGCTTTCAGTAGGAGTTCAAGATCAACACATCATGTAGGTGGGGTTGTACATGGAATGATTTTAACATGGTGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCGTGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTACAAGATACAGGTATCAGGAATTGGTTCGAAATTGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTCTATTCTGCTGTGACGTATTTTGGTGATGGCAATTGGCAGTATGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAATGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAAAAGAAAGGGAGCTTTACACAAGAGGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAGGAGGATTTAAGACTAGAAGCTGCAATTGCCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCACAGTGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATCATTAGTTGTAACTTCGTTGATCGAGAATCTGAACGGCCAACCATTACAATTGATGACTTTATGCCTTTAATTGCGTTAGCTCCAAAATCCGATATTGGTGCTTCAAAACTTCCCAAGAAGCGCAAGTCAAGCAATGTTTCCAAGAAAACAATCTCTAAGAAACGTGCAAAAAAAACTAGACGTTGTGCCAAAGAAGTACAAGATACAGTAGTATACAACGATGATGAGTTCTACGAAGAATCTGCATGCAGCGATCTTCCCAAGAAGAACACGGATTCCAAAAGGCATACAAAAAGAAGTAAAAATGGTCCCCAGGAAGTAGTGGATATATCTTGTAGTGACAAGGTCGAGACTTGCATCGAGGGTTCAGAAAACCAATCTACCTGTATTGCGAATTCGGAAAATCAAGATTGGGACAGCATGACGCTTTCGTCTTTTATACGCAACAAATCAAATGAGATATTATCTAGATTTAACAAAAAATTGAGTCAGACTTCCTTCTCCTCTAGGATTACAGATGTTACTGAGCAGGTTGAAAGTCAAAATCCATCTGATGACCAAAGCGGCTCGTTTGAGTCATGTGATACTGTTGGAACTATAAATTTGTTTGTGCCGCCGAATATTGCTTCTGATGGACGAGTTAGAAACCGAGAGGATACAAATGCTTTGACTGGTGATGATAACGACGACCATATGACCCTTGCATCCTTTCTAGGAAACAAACCAAAGAAAAAGTGTCAACCTAAAGGACATCACGTATGCTCTTCCAAATTGAAAACAGGATCTGCATTACTAAATGAAGAACATTGTGCAAGCAAGCCAACCATCATATCTGATGACAGTGGGTCAATGTCATATCATGTTGAAGCGATGGAGACTGTTTTACATGCTTGTGTTGATAAACCAATGGATACCATTGTGGAAGAAAAGGATGATGAGCTTTTTACTTCCCACGTGCAAAACCGGCCAAGGAGGGAACGAAAACGTCCCAGTAGATTTTTGTAG 3129 0.4247 MTPRVDDFGSLSSTDDDDDDDGFKEDMAALSRACRIVVPGAKDNSAAEDRVPLEDPPIDASTATVSVATDSDSDGQDDLECLKRVQSLYQPLSVLPPLAPLALSDDDDDLDDLETVRAIMRRFGDYNEGLREDGKKVLVEEDQTSSMGCEGDVANGSTHNESDGGKLYPISQDPNEAATEELIENIEMQLSEFVESSEPDAGESSRLPQKRLSFPPVVQCFIDAIKKNRDLQRFIRGKLIEIEAKIEENKKIRNRIKILKDFQASCNRRTGNVLSLKKDPRVQLISAKKSSVPKKSKKQKRVPAMCYGPEENSHAANYRMVLERFPLSLDRKKWSKVERENLLKGIKQQFQEMVLELSLSIDRTSSEELLREADDMDNIIASVKDLEVTPERIRKFLPKVNWDLIASMYVGGRTGAECESSSLITVSRLLPFHEEYFSTTLQTPMTITIRVSLTFLAFSRSSRSTHHVGGVVHGMILTWWWLNYEDPLINQGAWTKEEDKSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLYSAVTYFGDGNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDIRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIISCNFVDRESERPTITIDDFMPLIALAPKSDIGASKLPKKRKSSNVSKKTISKKRAKKTRRCAKEVQDTVVYNDDEFYEESACSDLPKKNTDSKRHTKRSKNGPQEVVDISCSDKVETCIEGSENQSTCIANSENQDWDSMTLSSFIRNKSNEILSRFNKKLSQTSFSSRITDVTEQVESQNPSDDQSGSFESCDTVGTINLFVPPNIASDGRVRNREDTNALTGDDNDDHMTLASFLGNKPKKKCQPKGHHVCSSKLKTGSALLNEEHCASKPTIISDDSGSMSYHVEAMETVLHACVDKPMDTIVEEKDDELFTSHVQNRPRRERKRPSRFL 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00024 1042 SUPERFAMILY Homeodomain-like 620 692 IPR009057 -
Vimu11g00024 1042 ProSiteProfiles Myb-like domain profile. 486 538 IPR001005 -
Vimu11g00024 1042 SMART sant 645 693 IPR001005 -
Vimu11g00024 1042 SMART sant 594 642 IPR001005 -
Vimu11g00024 1042 SMART sant 330 428 IPR001005 -
Vimu11g00024 1042 SMART sant 490 540 IPR001005 -
Vimu11g00024 1042 SMART sant 543 592 IPR001005 -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 791 811 - -
Vimu11g00024 1042 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 486 538 IPR017930 -
Vimu11g00024 1042 CDD SANT 597 640 IPR001005 -
Vimu11g00024 1042 CDD SANT 546 590 IPR001005 -
Vimu11g00024 1042 CDD SANT 649 690 IPR001005 -
Vimu11g00024 1042 Pfam Myb-like DNA-binding domain 648 689 IPR001005 -
Vimu11g00024 1042 Pfam Myb-like DNA-binding domain 595 638 IPR001005 -
Vimu11g00024 1042 Pfam Myb-like DNA-binding domain 494 555 - -
Vimu11g00024 1042 ProSiteProfiles Myb-like domain profile. 641 691 IPR001005 -
Vimu11g00024 1042 ProSiteProfiles SANT domain profile. 649 692 IPR017884 -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 749 766 - -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 148 165 - -
Vimu11g00024 1042 SUPERFAMILY Homeodomain-like 492 548 IPR009057 -
Vimu11g00024 1042 ProSiteProfiles Myb-like domain profile. 539 590 IPR001005 -
Vimu11g00024 1042 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 480 980 - -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 742 766 - -
Vimu11g00024 1042 ProSiteProfiles Myb-like domain profile. 594 640 IPR001005 -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 41 77 - -
Vimu11g00024 1042 Gene3D - 488 538 - -
Vimu11g00024 1042 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 594 IPR017930 -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 881 900 - -
Vimu11g00024 1042 Gene3D - 648 694 - -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 791 813 - -
Vimu11g00024 1042 Gene3D - 595 646 - -
Vimu11g00024 1042 CDD SANT 493 538 IPR001005 -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 142 167 - -
Vimu11g00024 1042 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 595 640 IPR017930 -
Vimu11g00024 1042 SUPERFAMILY Homeodomain-like 542 636 IPR009057 -
Vimu11g00024 1042 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 641 695 IPR017930 -
Vimu11g00024 1042 Gene3D - 545 594 - -
Vimu11g00024 1042 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00024 Vimu-Chr11 225023 231953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00024 481 782 MYB-Related Transcription Factor Family AT3G18100 53.074 2.07e-98 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g00024 Myb_DNA-bind_6 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00024 K09422 - gmx:778073 1177.93