Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00021 ATGGGTGCACCAAAAGTTTTCAGATGTGGAAGAAGAGGAAGAACAATGACTGGTAAAAGTTCAATTACTCAGCCAGCAACCAGACATGGAACCAACAAACCGACCAAATATGATTTAGCTGATCTAGAATGGACCAAAAAGATTCCAGAGTGTCCAACATACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTTTCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAGGATTTCAAGTTTGAAACAAACTTACAGCCTCTTCGTCTGTCTAAATGGAATGAGAAGGAAACAATAACCTTTTCTATGAGTGGCAGAAAATATACATATCATGAATTTGAGGCTCTTGCAAAGAAGACATTTTTCAGTAGATTTCACTGTTCTGGAGGTCTTTCTTCTTCATGTGTGGAAAAGGAGTTCTGGCATGAGATGATGCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAAACTTGGAATAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCACCCTTACGTTTAGTTGACAGGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGAATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAGTAAAACTTGGTATGGAGTGCCTGGCTATGCAGCCTCTCATTTTGAAAAAACTGTCTTACAACATGTGTATTGCAATAAGATCTTACCAAAACATGGAGAGGATGAAGCTTTCAGGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTTATGTTACAACATGATGTGGATGTTTACAAGGCTATACAGAAACCAGGAGAGTTTATCATCACCTTTCCTAGAGCTTATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAATTTTGCCACTGATGATTGGTTTCCATTTGGGGCAGCAGGTAGCAGGCGTTATGCAGTTCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGCAAAGAGGCAATGTTAGTTTACAAGTCCTCCTCAAGAGTCAGAAGTTCCAAGAACAAGCCTGAAGACAAAGCACCTTATAAAGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGACATCCCTTTTGCGACTGAAGAGTTCAAGAAACTTGCAAAGTTATTCAAATACATCAGGTTTGCTGATATGCCGCATATGCCACAGGGATTGTTATGTGGCTTACCTGCTATGCAAGTACTGCTTTTCTCATCCAATTTGTCTTTTCCATGACATTGAACCACACACTTGTATATGTGGAAGATTTTATTCAGTTTTCATAAGGAATGACATTTTGGAACTGGAAGAAGCTGCCAAAAGTTTTCAACAGAAAAGAGTATGCTGCACTGAAACATTCTCTGTATCAAGTTTATTCTCCTGTGACAGAAATGAATGCATCAAACATCTTGAGCAGGGTAATCCTTGGCAGCAAGAAAACAGTGTGAGAGGAACTGCAAATTCTCAAGGTACAGCATCTAAACCGAAAACACAAGTAGCTGACTGCATTAAGCAATGTGTTGAAAAGAAGACAAGAATGCTGCATTGGAGAAACAATGTGCTTCCATCTGTGAAGAGTACCAATAGGCCAGAAATCATTTATAACTTGAGAAAACGGAAATCAAATTGA 1818 0.3883 MGAPKVFRCGRRGRTMTGKSSITQPATRHGTNKPTKYDLADLEWTKKIPECPTYYPSEHEFDHPLVFLQKIAPEASKYGICKIVSPIAASNPAAFVLMKEKKDFKFETNLQPLRLSKWNEKETITFSMSGRKYTYHEFEALAKKTFFSRFHCSGGLSSSCVEKEFWHEMMHGEKGTVEYGVNVEGSAFSCDPDDKLGISKWNLKNFSRLLQSPLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGASKTWYGVPGYAASHFEKTVLQHVYCNKILPKHGEDEAFRFLAQKTTMFPPNVMLQHDVDVYKAIQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATDDWFPFGAAGSRRYAVLRMMPLIPYEELLCKEAMLVYKSSSRVRSSKNKPEDKAPYKAIVQPFLHLMQFYMTSLLRLKSSRNLQSYSNTSGLLICRICHRDCYVAYLLCKYCFSHPICLFHDIEPHTCICGRFYSVFIRNDILELEEAAKSFQQKRVCCTETFSVSSLFSCDRNECIKHLEQGNPWQQENSVRGTANSQGTASKPKTQVADCIKQCVEKKTRMLHWRNNVLPSVKSTNRPEIIYNLRKRKSN 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00021 605 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Vimu11g00021 605 Gene3D Cupin 51 414 - -
Vimu11g00021 605 Pfam jmjN domain 52 84 IPR003349 -
Vimu11g00021 605 MobiDBLite consensus disorder prediction 14 34 - -
Vimu11g00021 605 SMART JmjN_1 50 91 IPR003349 -
Vimu11g00021 605 SUPERFAMILY Clavaminate synthase-like 209 384 - -
Vimu11g00021 605 FunFam Lysine-specific demethylase isoform A 46 395 - -
Vimu11g00021 605 ProSiteProfiles JmjC domain profile. 198 368 IPR003347 -
Vimu11g00021 605 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 565 - -
Vimu11g00021 605 SMART cupin_9 198 368 IPR003347 -
Vimu11g00021 605 MobiDBLite consensus disorder prediction 16 31 - -
Vimu11g00021 605 Pfam JmjC domain, hydroxylase 228 351 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00021 Vimu-Chr11 208100 211124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00021 4 506 JUMONJI Transcription Factor Family AT2G34880 30.594 8.76e-62 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu11g00021 JmjC 4e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00021 - - gmx:100809650 921.768