Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00015 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTTTCCAAAAGAAGAGGTGGCCTCATCAAGAAGACAAAGGAGCTTTCTGTGCTCTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACTGGGAAGATCTGGCAATGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAAAGGTACCAGAGAGCAACAGGAGCTAGCTCCACAGAATGTGACCATCCCCGTGAAGAATTTATCCATGACATGACAATGCTGAGGCAAGAAACTCTCCGTCTTGAACTGGGAATTCAAAGGTATCTTGGAGAAGACATTGGTTGTTTGCAATTCGAAGATTTGACTAAACTTGAAGAAGAATTGGAAAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAACTCTTACAACAACAAATGGAGAATCTGAGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAGTAATTTGTCCAATTGGGAACACAGAGCAGTGTTGGAGTTTGAGAAGGCTACATTGGAAGCAAGCAAACCAATGCATATGATGGATGAGTTTCCATTCTTTGAAGAACAATCTGCTGGTAGCATCCTTCAACTTGCTTCTCCTGTGCTTCCACACTTTCACCCTTATCTTCAGCTTGCACAACCCAATATCAAGCCTCAGTGA 693 0.4372 MGRGKIEIKRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKIWQWCTEPFRMEQIIERYQRATGASSTECDHPREEFIHDMTMLRQETLRLELGIQRYLGEDIGCLQFEDLTKLEEELENSVAKVRNRQNELLQQQMENLRRKERILEEENSNLSNWEHRAVLEFEKATLEASKPMHMMDEFPFFEEQSAGSILQLASPVLPHFHPYLQLAQPNIKPQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00015 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vimu11g00015 230 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g00015 230 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vimu11g00015 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Vimu11g00015 230 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Vimu11g00015 230 Coils Coil 120 172 - -
Vimu11g00015 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu11g00015 230 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00015 Vimu-Chr11 172131 175511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00015 1 228 MADS-box Gene Family AT5G23260 47.809 2.26e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu11g00015 K-box 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00015 - - gmx:100783876 345.895