Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00006 ATGGAGTGTCTCTTTGGTTTTGCATCTTCTGTTTCAAGAGATTTAGTGTGTGGAGCATTAAATCAATTACGTTATCCTTGTTGCTTTAAAAATTTCGTCAAAAGACTTGAAGAAGAAGAGAGCAATTTGATTATAACGAGAGATAGTGTCCAAAAATTTGTTACGCATGTCAAGAAGCAAGCGAGAAAGCCCAGTGAAATTATGGACAAGTGGCTGGAAGATGCTATAAATGATGTACACAATGTGAATCAGTTGCTGGAAGAGGCAAGAACACAAAAACATTGTTGCTTTAAGCACTGCCCAAATTGGATTTGGCGATACCATGTTGGCAAAAAGTTAGCAAATAAAACTATGGACCTCGAAAAGTTTATTGAAAAGGGTAGAAAATATGTGCCATTTGACCGCATCGCTACGCTTCCTTCAAACACCCTTGATATGCTTTCAGAAAAATGCATGAATTTTGAGAGTAGGCAATCTGTTTACGAGCAACTACTGGATGCAGTGAAAAATAATGATGTTTCCATGATTGGGTTGTATGGGATGGGAGGTTGTGGTAAAACCACATTAGCAATGGAGGTTAGGAAATTAGTAGAAACAGAACATCTTTTTGAAAAAGTTCTTTTTGTACCTGTTTCTAGTACAGTAGAAGTTCGGAGGATTCAAGAAAAAATAGCAAGTTCTGTGCAATTTGAATTTCCAGAAACCGAAGAAATGCAGAGAGCCCAAAGATTGTGCTCAAGATTAACTCAAGAAAAAAATATTTTTATAATTCTAGATGATGTGTGGGAAAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTGAACACCATAAAGGTTGCAAAATTCTCATTACCACTAGATCAGAAGATGTTTGTATTTCAATGGATTGTCAAAGAAAGATTTACTTGCCAATTTTAACGGATGATGAAGCATGGACTCTTTTCCAAAATAAAGCACTTATATCAGAAGCCACCTCTCATACCTTAAAGGATATGGGAAAATTAATTTCGGATGAATGTAAAGGATTGCCGGTTGCCATTGCAGCTGTCGCTTGTAGTTTGAAGGGAAAAGCTGAGACGGTATGGAGTGTTGCATTAAATAAATTAAGACGTTCGAAGCCAATAAATATTGAAAGAGGTTTGATTGATCCCTACAAGTGTCTACAACTGAGCTATGATAATTTGGATGATATAGAAGCTAAATCACTTTTCTTGTTGTGCTCTGTGTTTCCTGAAGATTCTGAAATTCCAGTTGAAATTTTAACAAGATGTGCAATAGGATTAGGTGTAGTTGGAGAAGTTGACTCATATGAAGAGGCAAGGAGTGAAGTGATTGCAGCTAAAATTAAGCTTGTTAGTTGTTGTTTATTGTCGGATGCAGATCATGAACGTGTCAAAATGCATGACATAGTTCGTGATGTGGCCCACATCATAGCACAAAATGAGAATAAGATGATCAAGTGTGAAGTGGAGAAAGATGTTAGAGTGGAACAAAATTCTGTAAGATATCTATGGTGTTTGAAATTTCCAAATGATTTGGATTGCTCCAATCTTGAGTTTTTATACTTACGGACAAAGATGAAAGAATTTGATGGGATTTTCAAAAGAATGGGAATGCTCAAAGTTTTGATTCTTTACAACGATGGGGATGGAAAAACTCCATTGTCAATAATATCTTTCAAAACATTAACAAATCTTCGTGTTCTATTCATTTCCAATTTTGAATTGAGCGACTTCTCATTTTTTGGCGGTATGAAGAATCTTCAAAGTCTCTCGTTATATAATTGTTTATTGCCTTCATTTTCTGAATTACAAACCGATGTTGCGATTTCACTAAAATCGTTAGAGTTGAATGGATGTAACATTAAAGTGAAGAGTTTTGAAGTGATTAAAAGAATCCCGCTTTTGGAAGAGTTGTATATTATTGATATTGAAGGAGAATGGGATGCTAACAGTAAAGACAATATTGAATTCTTTAAGAAGTTTAGCGTTCCCGAAACACTTCAAAGGTATGGAATTGTGTTAGGGTCCCATAAATTTAAGCATTTTAATTCTGGAGATATTGACATTCATGGAAGAACTTTATTACTTAACCATTTTGACGTATCAAATAAGGTAATAAAGGGTTTGGCAAGAAAAGCAAAGGATCTATTTGTAGGAAATATTCATGGAGGTGCAAAAAATATGATCCCTGATATATTTCAAATTGAAGGAGGTGGTTTGAATGAGTTGAATACGTTGGACATAATTGATTCTAAAGAGTTAGAATGTTTGATTGACACTCGTAGTCAGTCGAGTGAGGTGGTAACTCTCTTCTCCAAGTTGCATACGCTGGGAATTGAGAACATGAGAAATCTAAGAGTTATATGGCATTGTTTTCTTCCTGCCAATGGACCTTTTGAGAACTTAGAGAAGTTGGTTTTAAGTTTTTGTCCACGATTGACATTTCTCTTCACATATGTGGTTGCTCGAAATTTGGTAAAATTGAAAATATTAGAAATATCAAGTTGTGATAAACTGAAGCATATCTTAACATATGATGAGAAAAGTGAAGATGAATTCACCAGTGGGCATCCTGTACAAATCTTTCAAACTCTTCAGGAAGTAGAGGTATTTTCCTGTCCAGAATTAAAACATATATTCTCGGCCAACATTGTTGGAGGATTAGGTCAATTGAAAGTGCTCAAGATAGAATGGTGCAACATGCTAGAACAAATAATTGGAGATATTGTTCCATTAAAAGAGCAGGACAGAAAAGAAGAACTTGATGAAATCGTTGAGGAAGCATCTATAGCTAAGACTGTGACTTCTTTGGAAGAATTGTTCATAGAACACTGCGAAAGTTTGAAGGATATAGTAACTCACGACGACATTGTTGAGGATGAGCATGATTGTCAGAGTGATATTTCAATCTTCCAAAGTTTGAAAAACCTACATATCAGTGAATGTGACTTATTGGAGCGTATATTCCCTGGTTCTTTTGTTGGAGGAATGACGAACGAACAAGTGAGTTTAAGGTTAGAGAAGTTGGAGTTGTATAATGTACCTCAAATGACTTATATTTGGGTGGGTCCCAACAATTCACTTACTCTCCAACATCTTACCACATTAGAAATAAGGAAATGTGGAAAGTTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATTCTTACCAGAGTTGAAGCTTTTGAAGATAAGGAAATGCAAAGAATTAAGAGAAATAATTGAAGGGGATGACCTTGTTTCTCCTCAGCCATGCTTCCCAAAACTAGAAGCATTGCATGTTGGTCATTGCCACAAGTTGAAAAGATGTTTCTCTGAATCTGCTTCTGATGACCTTCCCAATCTTTATTTTCTGGCCATAAATGGAGCCAATGAACTAGAAGAGCTTGTTGGATGTAAACAAGGAATGACTAAAGTTGAGCTTCCAAGACTCAAACTTTTAATATTTAGGCATCTGGAAAACTTCAGTCAAGAGATTGAATTGCATAATTTAAAGAATTGCATTGTCTACAAATGTCCAAAACTCTCTTTGACTTCAACAACTACTCTTCAGAAGCTCCGTGAAGATTTTCCTTACGAAGATTTCATAAACACCGAACTTGAACTTGATATTTGGACATTGAGTGGCATTGTAGCAGACATACTTGAAGACTATTCACAGGAAATTAGGGACGTAGAAAATCAGAGCATTAACTCTTCATGCACTGGAGTTGAAGACAGTGGCATTGGAGGTGTTGTTGCAACTCACATTGAGTCTGGTGGCGAGGACATACTTGCACTAGATTCCAAGGTAGTTGAACAAGATGATAAGATGAATGAAGGCAAGCCAGGAACAGTGGCAAGCCAAGGAGTCCAAGTAGAAGAAGGGTTGAACCTTTTGCATAAACAAGAAGGAATAGATTTTGTTCCTAACAACAATATTGACATTTCTTCAGCTTCTGCAGATATCCGTACAAGATTGGGAGCATATAAACATTTTGTTGATCTGGATGATGCACAGATTTCTCTTCTGGTGGAGGCAATAACAACATATCCTCATCTCTGGAATGCTTCCAAGAAGTTTAGTGAGCGTTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTTGTTCCTCCAGAAGGAAAGTGTGGATAGTATTATTCCTCAAAGAGAAAAAGAGTTCCACAAACTATGTGAAGAAGCTATTGAAGTTGGATTTGAGAGTTCATGGGTAGAGGAAATACGTCAACGTGTTGTGATGAGGGGTCCTAAGCTAGGAGAGGACATTGCACGGAGACAAATAGATGAGAATTCTAAGAGCAATTTAAGTTTGTTAAACAGGTGTAGTAGAGGGGACATGGTACCAGATTCCCAAGTTGTTGAAGAAGGTGATGGGCCAAAGATTAGCTTGGAAGAAGGTTCTGACTTGGTTGATAAAGAAGGTGAAGTAGGTGTTGTTTCTAATAACCACATTTTGGCTCCGAGAAATGAAGAAGCAGAGGAGGAATTTGTTGCAGAAGTTTCCACTTCAGAAATACCAAGAATAGCAACATCATTAACAAACATGCAAACAGTTAAAAAGCCAACACCCTCAAATCCATTGGTGGACACACAGCAGACTATTGAACCGTGTCCGATGAAGCAGAAAAAACCACTTGGTGAAATTCCTAAGAGTATTGAGCAAATTGTTGTAAAGGAAACCATAGCAAAGAATACCGATATGGCAGCTTCATCCATTCTTTCTGAATCCGGCAGCTCTCAGTTGGATCCAAAAAGTGAAATTACGAGCAGTCAAACTGAGGCAGGCACTGCTAAAGAAATTGACCATCCTAAAATTACTCAAGACTTTGGGACCAACGATGTCATAAGCTTATTTGCATCAGAAAAAGAGAGTGTAGATAGCCCAGTGGGAAAGACCCTCGCTGAGCTAGAAAAGCTTTTAAAGATGTCTCTGAAGGACGTAGTTAGCTCTGAAACTGACACTCTTCGTCTTTGGTCTACTCTTAATTTGCTGTCCAACCTTCCTTTCAAAGATGTGACTCTATCAGATGGACTCAAACGTATTATAAAAACTATGCACCAACACTTCCCAACCATTCTACGCTCCTTTAAACAAGGCTTTGCTACCACCGACAAGTTGGGAAAGCTTGAAGCTTATCAGAATGAGGTGGCCACTACTCTTGTTTCCAAAATTTCTGAGACAGAAAATTTCTACAATGAAGCTGAACAGAAGGAAGTAGTTTTGAAGGAACAAATAAAAGTTTGTGAGGCTGCCTTATCATCTTTGGAGAAGGAAAAGAATAATTGCATTGCGGAAACTATAGGGTACAAAAAGGAGCTTGAAAATGTGATGAAGGACAGATCTCAAATGTTGAAAGATAAAAGAAAAGTTGAGCAAGAATTGTTTGACGTGGCTTACAAATGGTCATATCTGTGTAGTGAATATGAGCTCAATCGCATGGCTGCTACAAATATCCCGTGA 5472 0.3715 MECLFGFASSVSRDLVCGALNQLRYPCCFKNFVKRLEEEESNLIITRDSVQKFVTHVKKQARKPSEIMDKWLEDAINDVHNVNQLLEEARTQKHCCFKHCPNWIWRYHVGKKLANKTMDLEKFIEKGRKYVPFDRIATLPSNTLDMLSEKCMNFESRQSVYEQLLDAVKNNDVSMIGLYGMGGCGKTTLAMEVRKLVETEHLFEKVLFVPVSSTVEVRRIQEKIASSVQFEFPETEEMQRAQRLCSRLTQEKNIFIILDDVWEKLDFGRIGIPSSEHHKGCKILITTRSEDVCISMDCQRKIYLPILTDDEAWTLFQNKALISEATSHTLKDMGKLISDECKGLPVAIAAVACSLKGKAETVWSVALNKLRRSKPINIERGLIDPYKCLQLSYDNLDDIEAKSLFLLCSVFPEDSEIPVEILTRCAIGLGVVGEVDSYEEARSEVIAAKIKLVSCCLLSDADHERVKMHDIVRDVAHIIAQNENKMIKCEVEKDVRVEQNSVRYLWCLKFPNDLDCSNLEFLYLRTKMKEFDGIFKRMGMLKVLILYNDGDGKTPLSIISFKTLTNLRVLFISNFELSDFSFFGGMKNLQSLSLYNCLLPSFSELQTDVAISLKSLELNGCNIKVKSFEVIKRIPLLEELYIIDIEGEWDANSKDNIEFFKKFSVPETLQRYGIVLGSHKFKHFNSGDIDIHGRTLLLNHFDVSNKVIKGLARKAKDLFVGNIHGGAKNMIPDIFQIEGGGLNELNTLDIIDSKELECLIDTRSQSSEVVTLFSKLHTLGIENMRNLRVIWHCFLPANGPFENLEKLVLSFCPRLTFLFTYVVARNLVKLKILEISSCDKLKHILTYDEKSEDEFTSGHPVQIFQTLQEVEVFSCPELKHIFSANIVGGLGQLKVLKIEWCNMLEQIIGDIVPLKEQDRKEELDEIVEEASIAKTVTSLEELFIEHCESLKDIVTHDDIVEDEHDCQSDISIFQSLKNLHISECDLLERIFPGSFVGGMTNEQVSLRLEKLELYNVPQMTYIWVGPNNSLTLQHLTTLEIRKCGKLEVIFPKSVVRFLPELKLLKIRKCKELREIIEGDDLVSPQPCFPKLEALHVGHCHKLKRCFSESASDDLPNLYFLAINGANELEELVGCKQGMTKVELPRLKLLIFRHLENFSQEIELHNLKNCIVYKCPKLSLTSTTTLQKLREDFPYEDFINTELELDIWTLSGIVADILEDYSQEIRDVENQSINSSCTGVEDSGIGGVVATHIESGGEDILALDSKVVEQDDKMNEGKPGTVASQGVQVEEGLNLLHKQEGIDFVPNNNIDISSASADIRTRLGAYKHFVDLDDAQISLLVEAITTYPHLWNASKKFSERFQAWRLKILADMLLFLQKESVDSIIPQREKEFHKLCEEAIEVGFESSWVEEIRQRVVMRGPKLGEDIARRQIDENSKSNLSLLNRCSRGDMVPDSQVVEEGDGPKISLEEGSDLVDKEGEVGVVSNNHILAPRNEEAEEEFVAEVSTSEIPRIATSLTNMQTVKKPTPSNPLVDTQQTIEPCPMKQKKPLGEIPKSIEQIVVKETIAKNTDMAASSILSESGSSQLDPKSEITSSQTEAGTAKEIDHPKITQDFGTNDVISLFASEKESVDSPVGKTLAELEKLLKMSLKDVVSSETDTLRLWSTLNLLSNLPFKDVTLSDGLKRIIKTMHQHFPTILRSFKQGFATTDKLGKLEAYQNEVATTLVSKISETENFYNEAEQKEVVLKEQIKVCEAALSSLEKEKNNCIAETIGYKKELENVMKDRSQMLKDKRKVEQELFDVAYKWSYLCSEYELNRMAATNIP 1823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00006 1823 SUPERFAMILY L domain-like 937 1179 - -
Vimu11g00006 1823 Gene3D Ribonuclease Inhibitor 863 1191 IPR032675 -
Vimu11g00006 1823 Gene3D - 141 303 IPR027417 -
Vimu11g00006 1823 Coils Coil 72 92 - -
Vimu11g00006 1823 MobiDBLite consensus disorder prediction 1577 1600 - -
Vimu11g00006 1823 MobiDBLite consensus disorder prediction 1577 1605 - -
Vimu11g00006 1823 PRINTS Disease resistance protein signature 175 190 - -
Vimu11g00006 1823 PRINTS Disease resistance protein signature 341 355 - -
Vimu11g00006 1823 PRINTS Disease resistance protein signature 248 262 - -
Vimu11g00006 1823 PRINTS Disease resistance protein signature 825 841 - -
Vimu11g00006 1823 Pfam NB-ARC domain 164 394 IPR002182 GO:0043531
Vimu11g00006 1823 Coils Coil 1735 1769 - -
Vimu11g00006 1823 FunFam Probable disease resistance protein At1g61300 147 301 - -
Vimu11g00006 1823 Gene3D Ribonuclease Inhibitor 721 852 IPR032675 -
Vimu11g00006 1823 SUPERFAMILY L domain-like 458 989 - -
Vimu11g00006 1823 Gene3D Ribonuclease Inhibitor 497 670 IPR032675 -
Vimu11g00006 1823 Coils Coil 1777 1797 - -
Vimu11g00006 1823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 408 IPR027417 -
Vimu11g00006 1823 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 966 1179 - -
Vimu11g00006 1823 Gene3D - 306 397 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00006 Vimu-Chr11 99664 107523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00006 157 881 WRKY Transcription Factor Family AT5G45050 23.553 1.35e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00006 - - vra:106752470 2561.95