Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00004 ATGATGGAGTGTCTCTGTGGTTTTGCATCTGCAGTTTCAAGAGATTTAGTGTGTGTGGCATTAAAAGAATTGCGTTATCTTCGCTCCTTGAACAATTCATTCGAAAAGGTTAAGCAAAAAGAGGGCAATTTGAAGGTAACAATAGATGATGTTCAAAAATCTGTTGATGATGACAAGAGAAAAACTAGAGAGACTAATGGAAATGTTTACAAGTGGCTGCAAGATGCTATCAGTAAGAAAGATGAAGTGAATCAGTTGCTAGAAGAGGCAAGAACAAAAAAAATGTGTTGCTTTGGGTATTGTCCAAATTGGATTTGGCGATACCGTACAGGAAAAAAGCTAGCAGAAGAAGTTTTTAAACTTGAAGATCTCATTGATAAGGGTGAAAAACATGTGTCATCTGACCGCATCCCTAAGCTACCTTCAGGCACCCTTAACCTTCTTTCAGAAAAATGCATGAATTTTGAGAGTAGACAATCTGCATACGAGCAACTACGGGATGCGGTGAAAAATAATGATGTTTCCATGATTGGGTTGTATGGAATGGGGGGTTGTGGTAAAACCACATTAGCAATGGAGGTTATGAAATTAGTAGAAGCAGAGCATCTTTTTGAAAAAGTTCTTTTTGTACCTGTTTCTAGTTCAGTGGATGTTCGAAGGATTCAAGAAAAAATAAGAAGTTCACTGCAATTTAAATTTCCAGAAACCGAAACCGAAGAAATGCAGAGAGCCCAAAGATTGTGCTCGTTTTTAACCGAAGAAAAAAATGCTCTTTTAATTCTAGATGATGTGTGGGAGAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTCAACACCGTAAAGGCTGCAAGATTCTCATTACCACTAGATCAGAAGATGTTTGTATTTCAATGGATTGTCAAAGAAAGATATACTTGCCAATTTTAACGGATGAAGAAGCATGGACTCTTTTCCAAAATAAAGCACTTATAACAGAAGCCACCTCTGATACCTTAAAGGATATGGGAAGATCAATTTCGGATGAATGTAAAGGATTGCCGGTTGCCATTGCAGCTGTTGCTTGTAGTTTGAAGGGAAAAGATGAGGAGGTATGGAGGGTTGCATTGAATAAATTGAGACAATCTAAGCCAATAAATATTCAAAGAGGTTTGACTGATCCCTACAAGTGTCTACAACTGAGCTATGATAATTTAGATACTAAAGAAGCTAAATCACTTTTCCTATTGTGCTCTGTGTTTCCTGAAGATTGGGAAATTCCAATTGAAGTTTTAACAAGATGTGCAATAGGATTAGGTGTAGTTGGAGGAGCTCACTCATATGAAGAGGCAAGGAGTGAAGTGATTGCAGCTAAAATTAAGCTTGTTAGTTGTTGTTTATTGTCGGATGCAGATGATGAAGGTGTCAAAATGCATGACATAGTTCGTGATGTGGCCCACATAATAGCAAAAAATGAGAATAAGATGATCAAGTGTGAAGTGGAAAAAGATGTTACAGTGGAACAAAATTCTGTGAGATATCTATGGTGTGTGAAATTTCCAAATGATGTGGATTGCTCCAAACTTGAGTTTTTAAGCTTAAGGATAGAGATGAAAGAATTTGATGGAATTTTCAAAAGAATGGGAATGCTCAAAGTTTTGATTCTTTACAACGATGGGGATGTAAAAACTTCATTGTCAACGTCATCTTTGAAAACATTAACAAATCTTCGAGATCTAATCATTTCCAAATGTGAATTGATTGACTTCTCATTTTTAAGCGGTATGAAGAATCTTCAAAGTCTCTCGTTATTTGGTTGTTCACTGCCTTCATTCCCTGAAATACAAACCCATGTTGCAATTACTCTAAAATTGTTAGAGTTGAATAGATGTGACATTAAAGTGAAGAATTTTGAAGTGATGAAGAGAATCCCACTTTTGGAAGAGTTGTACATTATTGATATTGAAGGAGAATGGGATGCTAACAGTGAAGATAATATTGAATTCTTTAAGACCTTTAGCATTCCCGAAACACTGCAAAGGTATGGAATTGTATTAGGGTCTTATAATTTTGATCATTATAATGATAGAGATATCTACATTGATGGCAGAACTTTATTACTTAACCATTTTGACATATCAAATGAGGTAATAAAGGGTTTGGCAAAAAAAGCAAAGCATTTATTTGTGGCAAATATTCATGGAGGTGCAAAAAATGTCATTCCTGATATATTTCAAATTGAAGGAGGTTTGGATGAGTTGAATAAGTTGGAGATACGTGATTCTGCAGAGATAAAGTGTTTGATTGACACTAGTAGTCTAACTCTCTTCTCCAAGTTGCATACACTGAGAATCTTAGAGAAGCTGTATTTAAGTGATTGTCCACGACTGACATCTCTCTTCACGTATGTTGTTGCTCGAAGTTTGGTAAAATTGAAAATATTAAAAATATCAGGATGTGATGAACTGAAGCATATATTTACAGATGAAGAGAAAGCAGAGAAAGGTCAAAATGAATTCTCCACAGGGCATCCTGTACAAATCGTTGAGAAAGAATCTATAGTTAAGACCTTGACTTCTTTGGAAGAATTGTTCATAGAAGACTGCAAAAGTTTGAAGGATATAGTAACTCACGAAAGGATCAATAAAAATCAGCAGGAAAGCATTGTTGAGGATGTGCATGATTGTGAGACTGATATTTCAATCTTCCAAAGTTTGAAAAAGCTATATATCAATGAATGTGGCTTATTGGAGCATATATTCCCTGTTTCTTTTGTTGGAGAATTGAATGATATAGACACTGATGATGAATATGGCAAAGAGAATATGAAAGCTATCTTTCCTAACTTAAAAGAACTCTCAGTGTATAACTGTTTCCGATTGAAATATATGTTTGGGCAATATCACGTAACTAATAAGGATTATAAGGAGATTCATATTCAATTCTCAGCATTAGAAATACTCTCTCTTAGTAATCTACCAAAGTTTGTTAGCATTTGTTCTACCAACACTCTCACTGTGATGTGGCCATCTTTGAAGGATCCGAAAGGGATTCAGAACAATCTCCCCGCTTTGCAAACTCTAAACATAAAGCATTCTGATGTAGAAGGTATTTTTTGTCTTAATGAACATCAAATGATTGGCCAACAAGTGAGTTTAAGGTTAGAGGACTTGGGGTTAGAATATCTACCTGAAATGACTTATATTTGGGTGGGTCCCAACAATTCACTTACTCTCCAACATCTTACCACATTATATATAAGGGATTGTGGAAAGTTGGAAGTAATCTTTCCAAAATCTGTTGTAAGATGCTTACCAGAGTTGAAGTGGCTAACCATAAAAGAGTGCATGGAATTGAAGCATATCATGGAAGAAGACGAGTCAAATATTCTTTCCATAGATGGAGGCTCTGAAGTAGAGGAGATTATTGGATGTGATAAAGAAACTTCAAAGAATTACTTTGCCTTAACAAATCTTGAAGAACTAGAAATAATTGAATGTGCGAAATTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATGCTTACCAGAGTTGAAGAAAGTAACCATAAGAGACTGCATGGAATTGAAGCATATCATGGAAGAAGACGAATCAAATCTTCTTTCCATAGATGGAGGCTCTGAAGTAGAGGAGATTATTGGATGTGATAAAGAAACTTCAAAGAATTACTTTGCCTTAACAAATCTTGAAGAACTACAAATAATTGAATGTGCGAAATTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATGCTTACCAGAGTTGAAGAAAGTAACCATAAGAGACTGCATGGAATTGAAGCATATCATGGAAGAAGACGAATCAAATCTTCTTTCCATAGATGGAGGCTCTGAAGTAGAGGAGATTATTGGATGTGATAAAGAAACTTCAAAGAATTACTTTGCCTTAACAAATCTTGAAGAACTACAAATAATTGAATGTGCGAAATTGGAAGTAGTCTTTCCAAAGTCTGTTTTAAAATGCTTACCAAAGTTGAAGCTTTTGAAGATAAGAAAATGCAAAGAATTAAGACAAATCATTGAAGGGTATAAAAATTTGTCTAATACTCTTTCTCCTCAACCATGCTTCCCAAAACTAGAAGCATTGCATGTTGATCATTGTCACAAGTTGAAAAGATTATTCTCTGGATATGCTTCTAATGACCTTCCCAATCTTCATCTTCTGGCCATAAATGGAGCCAATAAACTAGAAGAGCTTGTTGGATGTAAAGAAGGAAAGATTAAAGTTGAGCTTCCAGGACTCAAACTTTTAATATTTATGAATCTGGAAAACTTCAGTCAAGAGATTGAATTGCATAATTTAAAGAATTGCATTGTCTACAAATGTCCTAAATTATCTTTGACTTCAACAACTACTCTTAAGAAGCTCGATCAAGATTTTCCTTACAAAGTCATAGTAATATCCATATACGAAGATTCAACTATTAATGATAGCAGTGAGTTGACTTCATCACAGGAGATTGAGGACGGAGGAAATGAGAGCATTAAATCTTCATCCACTGGAGTTGAAGACATTGGCATTGGAGGTGTTGTTGCAACTCACGTTGAGTCTGGTGGTGAGGACAAACTTGAGCTAGATTCCAAGGTAGTTGAACAATATGATAAATTGAATGAAGGCAAGGCAGGAACGGTGGCAAGCCAAGGAGTCCAAGTAGAAGAAGGGTTGAACCTTTTTCATAAACAAGAGGGAATAGATGTTTTTCCTAACAACAATATTGACATTTCTTCAGCTTCTGCAGATATCCGTACAAGATTGGGAGCATATAAACATTTTGTTGATCTAGATGATGCACAAATTTCTCTTCTGGTGGAGGCAATTACAACATATCCTCATCTCTGGAATGCTTCCAAGAAGTTTAGTGAGCGCTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTTGTTCCTTCAAAAGGAAAGTGACTATAGTGTTATTCCTCAAAGAGAAAAAGAGTTCGATAAACTATGTGAAGAAGCTATTGAAATTGGATTTGAGAGTTCATGGGTAGAGGAAATGCGTCAACGTGTTGTAGGGAGGGATCCTAAGCTGGGAGAGGACATTGCACGGAGACAAAAAGATGAGAATTCTAAGAGGTGTAGTAGTGGGGACATTGTTGAAGAAGGTGATGGGCCAAAGATTAGCTTGGAAGAAGGTTCTGACTTGGTTGATAAAGAAGGTGAAATAGGTGTTCTTTCTAATCACCACATTGTTGCTCTGAGAAATGAAGAAGCAGAGCAGGAATTTGTTGCAGAAGTTTTCACTTCAGAAATACCAAGAATAGCAACATCATTAACAAACTTGCAAACAGTTGAAAACCCAACACCCTCTAAGCCATTGGTGGATACACAGCAGACTAGTGAACCGTGTTTGATGGAGCAGAAAAAACCACTTGCTGAAATTCCTAAGAGTATTGAGCAAGTTGCTGTAGAGGAAACCATAGTAAAGAAAACCAATACGACAGTTTCATCAATTCTTTCCGAATCCGCCACCTCTAAGTTGGATCCATCAATTACTTTTCAAAGTAAATCAGATCCACATAATGAAATGATACCAATTGAGGCACGCATTATTAAAGAAAGTGAAGGCCATCGTGAACTCATTCAAGACTTTGGGAGCAACGATATGATACCAATTGCTTTGGGGAAAGAGGGTGAAGATAATATAGTTTTAAAGACCCTTTTTGAGCTGGAAAACTATCTCAAGATGTCTCTCAAGGACATTGTTAGTTCTGAGACTAACACCCTCCGTCTTTTTTCTACTCTTAATTTTCTCTCCAACCTTCCTTTCAAAGATATCACTCTATCAGATCGACTCAAACATATTATAGAGACTATGCACCAACAATTCCCAACCATTCTATGCTCCTTTAAGCAACGCTTTGCTACCACTCACAAGTTGGCAGAACTTGAAGCTCGTCAGAATGAGGTGGCCATTAAAATTTCCGAGGCAGAGAATTTCAATGATGAAGCTCAACTAAAGGAAGTGGTTTTGAAGGAAGAAATCATTAGGTTGAAGGAAGAAATAAAAGTTTGTGAGGCTGCCTTATCATCTCTGAATGAAGGAAAAAATAAATGCATTGCGGAAACTATAAGGTATAAAAAGGAGCTTGAAAATGTGAGAAAAAACAAATCTCAAATGGTGGAAGATCAAAGAAAAGTTGAGCAAGAATTGCTTAAAATGGCTTATAAATGGTCAGTTCTGTGTAGTGAATATGAGCTCGATCGCATGGCTGCTAGAAATCCCTCGTGA 6276 0.3628 MMECLCGFASAVSRDLVCVALKELRYLRSLNNSFEKVKQKEGNLKVTIDDVQKSVDDDKRKTRETNGNVYKWLQDAISKKDEVNQLLEEARTKKMCCFGYCPNWIWRYRTGKKLAEEVFKLEDLIDKGEKHVSSDRIPKLPSGTLNLLSEKCMNFESRQSAYEQLRDAVKNNDVSMIGLYGMGGCGKTTLAMEVMKLVEAEHLFEKVLFVPVSSSVDVRRIQEKIRSSLQFKFPETETEEMQRAQRLCSFLTEEKNALLILDDVWEKLDFGRIGIPSSQHRKGCKILITTRSEDVCISMDCQRKIYLPILTDEEAWTLFQNKALITEATSDTLKDMGRSISDECKGLPVAIAAVACSLKGKDEEVWRVALNKLRQSKPINIQRGLTDPYKCLQLSYDNLDTKEAKSLFLLCSVFPEDWEIPIEVLTRCAIGLGVVGGAHSYEEARSEVIAAKIKLVSCCLLSDADDEGVKMHDIVRDVAHIIAKNENKMIKCEVEKDVTVEQNSVRYLWCVKFPNDVDCSKLEFLSLRIEMKEFDGIFKRMGMLKVLILYNDGDVKTSLSTSSLKTLTNLRDLIISKCELIDFSFLSGMKNLQSLSLFGCSLPSFPEIQTHVAITLKLLELNRCDIKVKNFEVMKRIPLLEELYIIDIEGEWDANSEDNIEFFKTFSIPETLQRYGIVLGSYNFDHYNDRDIYIDGRTLLLNHFDISNEVIKGLAKKAKHLFVANIHGGAKNVIPDIFQIEGGLDELNKLEIRDSAEIKCLIDTSSLTLFSKLHTLRILEKLYLSDCPRLTSLFTYVVARSLVKLKILKISGCDELKHIFTDEEKAEKGQNEFSTGHPVQIVEKESIVKTLTSLEELFIEDCKSLKDIVTHERINKNQQESIVEDVHDCETDISIFQSLKKLYINECGLLEHIFPVSFVGELNDIDTDDEYGKENMKAIFPNLKELSVYNCFRLKYMFGQYHVTNKDYKEIHIQFSALEILSLSNLPKFVSICSTNTLTVMWPSLKDPKGIQNNLPALQTLNIKHSDVEGIFCLNEHQMIGQQVSLRLEDLGLEYLPEMTYIWVGPNNSLTLQHLTTLYIRDCGKLEVIFPKSVVRCLPELKWLTIKECMELKHIMEEDESNILSIDGGSEVEEIIGCDKETSKNYFALTNLEELEIIECAKLEVIFPKSVVRCLPELKKVTIRDCMELKHIMEEDESNLLSIDGGSEVEEIIGCDKETSKNYFALTNLEELQIIECAKLEVIFPKSVVRCLPELKKVTIRDCMELKHIMEEDESNLLSIDGGSEVEEIIGCDKETSKNYFALTNLEELQIIECAKLEVVFPKSVLKCLPKLKLLKIRKCKELRQIIEGYKNLSNTLSPQPCFPKLEALHVDHCHKLKRLFSGYASNDLPNLHLLAINGANKLEELVGCKEGKIKVELPGLKLLIFMNLENFSQEIELHNLKNCIVYKCPKLSLTSTTTLKKLDQDFPYKVIVISIYEDSTINDSSELTSSQEIEDGGNESIKSSSTGVEDIGIGGVVATHVESGGEDKLELDSKVVEQYDKLNEGKAGTVASQGVQVEEGLNLFHKQEGIDVFPNNNIDISSASADIRTRLGAYKHFVDLDDAQISLLVEAITTYPHLWNASKKFSERFQAWRLKILADMLLFLQKESDYSVIPQREKEFDKLCEEAIEIGFESSWVEEMRQRVVGRDPKLGEDIARRQKDENSKRCSSGDIVEEGDGPKISLEEGSDLVDKEGEIGVLSNHHIVALRNEEAEQEFVAEVFTSEIPRIATSLTNLQTVENPTPSKPLVDTQQTSEPCLMEQKKPLAEIPKSIEQVAVEETIVKKTNTTVSSILSESATSKLDPSITFQSKSDPHNEMIPIEARIIKESEGHRELIQDFGSNDMIPIALGKEGEDNIVLKTLFELENYLKMSLKDIVSSETNTLRLFSTLNFLSNLPFKDITLSDRLKHIIETMHQQFPTILCSFKQRFATTHKLAELEARQNEVAIKISEAENFNDEAQLKEVVLKEEIIRLKEEIKVCEAALSSLNEGKNKCIAETIRYKKELENVRKNKSQMVEDQRKVEQELLKMAYKWSVLCSEYELDRMAARNPS 2091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00004 2091 Coils Coil 73 93 - -
Vimu11g00004 2091 Gene3D Ribonuclease Inhibitor 974 1200 IPR032675 -
Vimu11g00004 2091 Coils Coil 1996 2016 - -
Vimu11g00004 2091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 411 IPR027417 -
Vimu11g00004 2091 Gene3D - 310 394 IPR042197 -
Vimu11g00004 2091 Coils Coil 2045 2065 - -
Vimu11g00004 2091 Gene3D Ribonuclease Inhibitor 1217 1409 IPR032675 -
Vimu11g00004 2091 Gene3D - 143 306 IPR027417 -
Vimu11g00004 2091 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 889 1117 - -
Vimu11g00004 2091 Pfam NB-ARC domain 167 398 IPR002182 GO:0043531
Vimu11g00004 2091 MobiDBLite consensus disorder prediction 1487 1506 - -
Vimu11g00004 2091 PRINTS Disease resistance protein signature 344 358 - -
Vimu11g00004 2091 PRINTS Disease resistance protein signature 176 191 - -
Vimu11g00004 2091 PRINTS Disease resistance protein signature 251 265 - -
Vimu11g00004 2091 PRINTS Disease resistance protein signature 800 816 - -
Vimu11g00004 2091 FunFam Probable disease resistance protein At1g61300 152 304 - -
Vimu11g00004 2091 Gene3D - 395 481 IPR036388 -
Vimu11g00004 2091 SUPERFAMILY L domain-like 467 1113 - -
Vimu11g00004 2091 Gene3D Ribonuclease Inhibitor 501 665 IPR032675 -
Vimu11g00004 2091 MobiDBLite consensus disorder prediction 1700 1722 - -
Vimu11g00004 2091 Gene3D Ribonuclease Inhibitor 696 957 IPR032675 -
Vimu11g00004 2091 SUPERFAMILY RNI-like 1226 1439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00004 Vimu-Chr11 73580 82998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00004 173 819 WRKY Transcription Factor Family AT5G45050 23.133 5.09e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00004 - - vra:106753628 2486.06