Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00003 ATGGAGTGTGTCTTGGGTTTTGCATCTTCTATTTCAAGAGATTTAGTGTGTGGAGCATTAAATCAATTACGTTATCCTTGTTGCTTTAAAAATTTCGTCAAAAAGCTTAAAGAAGAAGAGAACAATTTGATTATAACGAAAGATATTGTCCAAAAATTTGTTACGCATAACAAGAGACAAGCGAGAAAGCCCAGTGAAATTGTGGACAAGTGGCTGGAAGATGCTATCAATGAAGTACAAAATGTCAATCAGTTGCTGGAAGAGGCAAGAACACAAAAACATTGTTGCTTTAAGCACTGCCCAAATTGGATTTGGCGATACCATGTTGGCAAAAAGTTAGCTAATAAAACTATGCACCTCGTAAAGGTCATTGAAGAGGGTAGAAAATATGTGCCATTTGACCGCATCGCTACGCTTCCTTCAAACACCCTTGATATGCTTTCAGAAAAATGCATGAATTTTGATAGTAGACAATCTGCATACGAGCAACTACTGGATGCAGTGAAAAATAACGATGTTTCCATGATTGGGTTGTATGGGATGGGAGGTTGTGGGAAAACCACATTAGCAATGGAGCTTAGGAAATCAGTAGAAGCAGAGCATCTTTTTGAAGAAGTTCTTTTTGTACCTGTTTCAAGTACGGTAGAAGTTCGGAGGATTCAAGAAAAGATAGCAAGTTCACTGCAATTTGAATTTCCAGAAACTGAAGAAATGCAGAGAGCCCAAAGATTGTGCTCAAGATTAACTCGAGAGAAAAATATTTTTATAATTCTAGATGATGTGTGGGAGAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTGAATACCTTAAAGGCTGCAAGATTCTCATTACCAGTAGATCAGAAGAAGTTTGTACTTTAATGGATTGTCAAAGAAAGATTTACTTGCCAATTTTAACCGATGAAGAAGCATGGACTCTTTTCGAAAATAAAGCACTTATAACAGAAGCCACCCCTGATACCTTAAAGGAAATGGGAAGATTAATTTCCAATGAATGTAAAGGATTGCCGGTTGCCATTGCAGCTGTTGCTTGTAGTTTGAAGGGAAAACCTGAGACGGTATGGAGGGATGCATTAAATAAATTAAGACGTTCCAGGCCAATAAATATTGAGAAAGGTTTGATTGATCCCTACAAGTGTCTACAACTGAGCTATGATAATTTAGATACTAAAGAAGCTAAATCACTTTTCCTGTTGTGCTCTGTGTTTCCTGAAGATTATGAAATTCAAGTTGAAATTTTAACAAGATGTGCAATAGGATTAGGTGTAGTTGGAGGAGCTCACTCATATGAAGAGGCAAGGAGTGAAGTGATTGCAGCTAAAATTAAGCTTGTTAGTTGCTGTTTATTGTTGGATGCAGATGATGAACGTGTCAAAATGCATGACATAGTTCGTGATGTGGCCCACATAATAGCAAAAAATGAGAATAAGATGATCAAGTGTGAAGTGGAGAAAGATGTTAAAGTGGAAAAAAATTCTGTAAGATATCTATGGTGTGCGAAATTTCCAAATGATTTGGATTGCTCCAATCTTGAGTTTTTATGCTTACAAACAAAGATGAAAGAATTTGACGGGATTTTCGAAAGAATGGGAATGCTCAAAGTTTTGATTATTGACAACGACGGGGGTGGAAAAACACGATTGTCAACAATATCTTTCAAAACATTAACAAATCTTCGTTATCTATTCATTTGCAGTTGTGAATTGAGCGACTTCTCATTTTTAAGCGCCATGAAGAATCTTCAGAGTTTAGAGTTATATTATTGTTTACTGCCTTCATTTCCTGAGTTACAAACCGATGTTGCAATTACACTAAAATTGTTAGAGTTGAATAAATGTGTCATTAAAGTGAAGAATTTTGAAGTGATGAAGAGAATCCCGCTTTTGGAAGAGTTGTACATTATTGATATTGAAGGAGAATGGTATGCTAACAGTGAAGACAATATTGAATTCTTTAAGACGTTTAGCATTCCCGAAACACTGCAAAGGTATGGAATTGTATTAGGGTCTCGTTACTTTGATCATTATAGTGATGGAGATATTTACATTGATGGCAGAACTTTATTACTTAAACATTTTGACATATCAAATGAGGTAGTAAAGGGTTTGGCAAAAAAAGCAAAACATCTATTTGTGGGAAATATTGATGGAGGTGCAAAAAATATGATCCCTGATATATTTGAAATTGAAGGAGGAGGTTTGAATGAGTTGAATACGTTGGAGATACATGATTCTGAAGAGTTAGAATGTTTGATTGACACTCGTAGTCACTCGAGTGAGGTGGTAACTCTCTTCTCCAAGTTGCAAATGTTGAGAATCGAGAACATGGAAAATCTAAAAGCTATATGGCATTGTTTTCTTCCAGCCAATGGGTCTTTTGAGAACTTACAGAAGTTGTATTTAGATTATTGTCCACTGTTGACATTTCTCTTCACGTATGTGGTTGCTCGATGTTTGGTAAAGTTGAAAATATTAAAAATATGGAGATGTTATGAGCTGAAGCATATATTAGCAGATGATGAGAAAGCAGAGAAAAGCCAAGATGAATTCACCAGTGGGCAACATGTACAAATCTTCCAAAATCTTCAGGAAGTAGAGGTATATAGTTGTGGAGAACTAAAACATATATTCTCAACCAACATTGTTGGAGGCTTAACTCAATTGAAAGTTCTCGAGATAAGAGAATGTGACAAGCTAGAACAAATAATTGGAGATATTGTTCCATTAACAGCGCAGGATAGAAAACAAGAACTTGATGAAATCGTTGAGGAAGAAGGGACTCTATCCAGCCTTGGAAGCCTTAAGATAAAAGGTTGTGGGAAGTTAGGCTCAATTTTTACAGCATGTATAGCTAAGACATTGACTTCTTTGGAAGAATTATTCATAGAAGACTGCGAAAGTTTGAAGGTTATAGTAACTCACGAAAGGATCAATAAAAATCAGGAGGAAAGCATTGTTGAGGATGAGCATGATTATCAGAGTGATATTTCAATCTTCCAAAATTTGAAAACGCTACGTATCAGTGAATGTGACTTATTGGAGGGTATATTCCCTGTTTCTTTTGTTGGAGAATTGAATGAAATAACAAATAAAGAGGCTGCTGATTTGAAAGACTTCTCTAGTCGAAATAATACTCAAATTGAGCTTCCTGCTTTACAAGAACTTGAACTTCATCATATTATTCTTGGTAGTTATGATGTGATATGTCCATCTTTAAGAACACTATCATTGGATATTGGGAAATATGTTGGGTTTTTCAACATAAATTATTCAACAGATGTTTCAGAAGCTACAAAAAGGGATTCTATTGCAATCAAGATATCGAACTCAAATTTTGATCCACATGGTTTGAACTTGATTATGACACACAATATTAGAGAGATTGAACTGATTGGCTTTGATAAGGCAAAGTACCTTTTTAAACTTTCCATTGCTTCATCATTGATGATGTTGGAAATTTTGAGAATTAAGGAATGTGAAGGACTTGAGTACATTATAGACACTGATGATGATGAATATGGCAAAGAGAATATGAAACCTATCTTTCCTAACTTAAAAAAGCTCTTTGTGTATGAGTGTTTCGAATTGAAATATATGTTTGGGCAATATGACGTAGCTAATAAGGATTATAAGGAGATTCATATTCAATTCTCAACATTGGAATCACTCTCTCTTAATGATCTACCAAAGTTTGTTAGCATTTGTTCTACCAACACTCTCACTGTGACGTGGCCATCTTTGAAGTACTTTGAGTGTTACAAATGTTTCTATCCATTGTATGATTCTGTTAGTTGTTTGACGATTCCTACAAATTCAAGAGAGCCTATTATGACAAGAGCGAAGGATTCGAAAGGGATTCAGAACGACATTTGGGTGGGTCCTAACAATTCACTTACTCTCCAATATCTTACCAAATTAAAAATAACATATTGTGGAAAGTTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATCCTTACCAAAGTTGAACAACATAACCATAAAACAGTGCATGGAATTGAAGCAGATCTTCGAAGAAGACGAGTCCAATCTTCATTCTATAGATGGAGGCTATGAAAAAGAAGCTTCAAAGAATAATTTTACCTTTCCAAATCTTGAAAAACTAGAAATAATTGAATGTGCGAAATTGGAAATAATCTTTCCAAAGTCTGTTTTCAGATGTTTTCCAAAGTTGATGCTTTTGAAGATAAGGAAATGCAAAGAATTAAGAGAAATCATTGAAGGGGATAAAAATTTGTCTAATATTGTTTCTCCTCAACCATGCTTCCCAAAACTAGAAGCATTGCTTGTTGATGATTGTCACAAGTTGAAAAGATTATTCTGTGGATCTGCTTCTAATGACCTTCCCAATCTTCATCTTCTGGCCATAAATGGAGCATATGAACTAGAAGAGCTTGTTGGATGTAAACAAGAAAAGATTAAAGAGCTTCCAAGACTCAAACTTTTAATATTTATAAATCTGGAAAACTTCAGTCAAGAGATTGAATTGCATAATTTAAAGAATTGCATTGTCTACGAATGTCCAAAGCTCTCTTTGACTTCAACAACTACTCTTCGGAAGTTCCGGCACTATTTTTCTTACGAAGGGAAGGAGGTTTTCCATACCAATTATGCACTTGAAGAAGATATAGTAATAGGACTCCTTTCAGACTTTAGAGCCACTCACTCGATCGAGATGGGGGACGTAGAAAATGAGAGCATTAAATCTTCATCCATTGGAGTTGAAGACATTGGCATTGGAGATGCTGTTGCAACTCATGTTGAGTCTGGTGTTGAGGACAAACTTGCGCTACATTCCAAGGTAGTTGAACAAGATGCTAAATTGAATGAAGGCAAGCAAGGAATAGTGGAAAGCCAAGGAATCCAAATAGAAGAAGGGTTGAAACTTTTGCATAAACAAGAGGGAATAGATGATGTTCCTAACAACAAAATTGACATTTCTTCAGCTTCTGCAGATATCCATACAAGATTGGGAGCCTATAAACATTTTGTTGATCTGGATGATGCACAGATTTCTCTTCTGGTGGAGGCAATAACAACATATCCTCATCTCTGGAATGCTTCCAAGAAGTTTAGTGAGCGTTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTTGTTCCTCCAGAAGGAAAGTGTGGATGGTATTATTCCTCAAAGAGAAAAAGAGTTCGATAAACTATGTGAAGAAGCTATTGAAGTTGGATTTGAGAGTTCATGGGTAGAGGAAATGCGTCAACTTGTTGTGGCGAGGGATTCTAAGCTGGGACAGGACATTGCACGGAGACAAATAGATGAGAATTCTAAAAGCAATTTAAGCTTGTTAAACAGGTGTAGTAGTGGGGACATGATAGAAGATTCCCAGGCTGTTGAAGAAGGTGCTGGGCCTAAGATTAGCTTGGAAGAAGGTTCTGACTTGGTTGATAAAGAAGGTGAAATAGGTGTTCTTTCTAATCACCACATTGTGACTCCGAACAATGAAGAAGCAGAGCAGGAATTTGTTGCGGAAGTTTCCACTTCAGAAATACCAAGAATAGCAACATCATTAACAAATGCATTGGTGGACACACAGCAGACTAGTGAACCGTGTCTGATGAAACAGAAAAAACCACTTGGTGAAATTCCTAAGAGTATTGAGCAAGTTGGTGTAGAGGAAACCATAGCAAAGAACACCAATATGGCAGCTTCATCAATTCTTTCCGAATTTTCCAGCTCTCAGTTGGACCCAACAGGAGAAATTAGCAGCAGCCAAATTGAGGCACGCATTGCTAAAGAAAGTGAAGGCCATCCTAAAATCATTCAAGACTTTGGGGCCAATGATATCACGAATTTATTTGCACCAATTGTTGTGGGGAAAGAGGGTGAAGATAAGCTAGTTGGAAAGACCCTTGCTGAGTTAGAAAAGCATCTGAAGATGTCTCTGAAGGATATAGTTAGCTCTCAGACTAACAGCCTTTGCCTTTTGTCTGCTCTTAATTTCCTGTCCAACCTTCCTTTCAAAGATGTGAAACTATCAGATGGACTCCAACATATTATAAACACTATGCACCGAGACTTCCCAAGCATTTTATGCTCCTTTAAGCAAGGCTTTTCCACCATTGAAAAGTTGGCAGAACTTGAAGCTCGTGCGAATGAGGTGACCATTAAAAAGAATTTGTATGATGAACTTCAACGGAAGGAAGTAGTTTTGAAGGAACAAATCATTAGGTTGAAGGAAGAAATAAGAGTTTGTGAGGTTGCCTTATCATCCCTTGAGGAGGAAAAAAATAAATGCATTGCGGAAACTGTAGAATACAAAACGGAGCTTGAAAATGCGAGGAAAGACGAATCTCAAATGTTGGTGGTGGCTCATAAATGGTCAGTTCTGTGTAGTCAATATGAGCTCAATCGCATGGCTGCTACAAATCCCTCGTGA 6465 0.3667 MECVLGFASSISRDLVCGALNQLRYPCCFKNFVKKLKEEENNLIITKDIVQKFVTHNKRQARKPSEIVDKWLEDAINEVQNVNQLLEEARTQKHCCFKHCPNWIWRYHVGKKLANKTMHLVKVIEEGRKYVPFDRIATLPSNTLDMLSEKCMNFDSRQSAYEQLLDAVKNNDVSMIGLYGMGGCGKTTLAMELRKSVEAEHLFEEVLFVPVSSTVEVRRIQEKIASSLQFEFPETEEMQRAQRLCSRLTREKNIFIILDDVWEKLDFGRIGIPSSEYLKGCKILITSRSEEVCTLMDCQRKIYLPILTDEEAWTLFENKALITEATPDTLKEMGRLISNECKGLPVAIAAVACSLKGKPETVWRDALNKLRRSRPINIEKGLIDPYKCLQLSYDNLDTKEAKSLFLLCSVFPEDYEIQVEILTRCAIGLGVVGGAHSYEEARSEVIAAKIKLVSCCLLLDADDERVKMHDIVRDVAHIIAKNENKMIKCEVEKDVKVEKNSVRYLWCAKFPNDLDCSNLEFLCLQTKMKEFDGIFERMGMLKVLIIDNDGGGKTRLSTISFKTLTNLRYLFICSCELSDFSFLSAMKNLQSLELYYCLLPSFPELQTDVAITLKLLELNKCVIKVKNFEVMKRIPLLEELYIIDIEGEWYANSEDNIEFFKTFSIPETLQRYGIVLGSRYFDHYSDGDIYIDGRTLLLKHFDISNEVVKGLAKKAKHLFVGNIDGGAKNMIPDIFEIEGGGLNELNTLEIHDSEELECLIDTRSHSSEVVTLFSKLQMLRIENMENLKAIWHCFLPANGSFENLQKLYLDYCPLLTFLFTYVVARCLVKLKILKIWRCYELKHILADDEKAEKSQDEFTSGQHVQIFQNLQEVEVYSCGELKHIFSTNIVGGLTQLKVLEIRECDKLEQIIGDIVPLTAQDRKQELDEIVEEEGTLSSLGSLKIKGCGKLGSIFTACIAKTLTSLEELFIEDCESLKVIVTHERINKNQEESIVEDEHDYQSDISIFQNLKTLRISECDLLEGIFPVSFVGELNEITNKEAADLKDFSSRNNTQIELPALQELELHHIILGSYDVICPSLRTLSLDIGKYVGFFNINYSTDVSEATKRDSIAIKISNSNFDPHGLNLIMTHNIREIELIGFDKAKYLFKLSIASSLMMLEILRIKECEGLEYIIDTDDDEYGKENMKPIFPNLKKLFVYECFELKYMFGQYDVANKDYKEIHIQFSTLESLSLNDLPKFVSICSTNTLTVTWPSLKYFECYKCFYPLYDSVSCLTIPTNSREPIMTRAKDSKGIQNDIWVGPNNSLTLQYLTKLKITYCGKLEVIFPKSVVRSLPKLNNITIKQCMELKQIFEEDESNLHSIDGGYEKEASKNNFTFPNLEKLEIIECAKLEIIFPKSVFRCFPKLMLLKIRKCKELREIIEGDKNLSNIVSPQPCFPKLEALLVDDCHKLKRLFCGSASNDLPNLHLLAINGAYELEELVGCKQEKIKELPRLKLLIFINLENFSQEIELHNLKNCIVYECPKLSLTSTTTLRKFRHYFSYEGKEVFHTNYALEEDIVIGLLSDFRATHSIEMGDVENESIKSSSIGVEDIGIGDAVATHVESGVEDKLALHSKVVEQDAKLNEGKQGIVESQGIQIEEGLKLLHKQEGIDDVPNNKIDISSASADIHTRLGAYKHFVDLDDAQISLLVEAITTYPHLWNASKKFSERFQAWRLKILADMLLFLQKESVDGIIPQREKEFDKLCEEAIEVGFESSWVEEMRQLVVARDSKLGQDIARRQIDENSKSNLSLLNRCSSGDMIEDSQAVEEGAGPKISLEEGSDLVDKEGEIGVLSNHHIVTPNNEEAEQEFVAEVSTSEIPRIATSLTNALVDTQQTSEPCLMKQKKPLGEIPKSIEQVGVEETIAKNTNMAASSILSEFSSSQLDPTGEISSSQIEARIAKESEGHPKIIQDFGANDITNLFAPIVVGKEGEDKLVGKTLAELEKHLKMSLKDIVSSQTNSLCLLSALNFLSNLPFKDVKLSDGLQHIINTMHRDFPSILCSFKQGFSTIEKLAELEARANEVTIKKNLYDELQRKEVVLKEQIIRLKEEIRVCEVALSSLEEEKNKCIAETVEYKTELENARKDESQMLVVAHKWSVLCSQYELNRMAATNPS 2154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00003 2154 Coils Coil 2053 2118 - -
Vimu11g00003 2154 Gene3D Ribonuclease Inhibitor 1293 1431 IPR032675 -
Vimu11g00003 2154 Gene3D Ribonuclease Inhibitor 694 856 IPR032675 -
Vimu11g00003 2154 Gene3D Ribonuclease Inhibitor 857 998 IPR032675 -
Vimu11g00003 2154 Gene3D Ribonuclease Inhibitor 493 665 IPR032675 -
Vimu11g00003 2154 SUPERFAMILY RNI-like 1306 1501 - -
Vimu11g00003 2154 Coils Coil 72 92 - -
Vimu11g00003 2154 SUPERFAMILY L domain-like 463 1024 - -
Vimu11g00003 2154 PRINTS Disease resistance protein signature 175 190 - -
Vimu11g00003 2154 PRINTS Disease resistance protein signature 341 355 - -
Vimu11g00003 2154 PRINTS Disease resistance protein signature 891 907 - -
Vimu11g00003 2154 PRINTS Disease resistance protein signature 248 262 - -
Vimu11g00003 2154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 408 IPR027417 -
Vimu11g00003 2154 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1186 1354 - -
Vimu11g00003 2154 Pfam NB-ARC domain 163 394 IPR002182 GO:0043531
Vimu11g00003 2154 Gene3D - 306 397 IPR042197 -
Vimu11g00003 2154 FunFam Probable disease resistance protein At1g61300 147 301 - -
Vimu11g00003 2154 Gene3D - 141 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00003 Vimu-Chr11 55248 65155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00003 172 646 WRKY Transcription Factor Family AT5G45050 23.260 4.02e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00003 - - vra:106753628 3103.92