Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00002 ATGGAGAGTCTTTTGGGTTTTGCATCTTCTGTTTCAAGAGATTTAGTGTGTGGAGCATTAAATCAATTACGTTATCCTTGTTGCTTTAAAAATTTCGTCAAAAAGCTTGAAGAAGAAGAGAGCAATTTGATTGTAACGAGAGATAGTGTCCAAAAATTTGTTACGGATGCTGCCAAGAAACAAGCGAGAAAGCCCAGTGAAATTGTGGACAAGTGGCTCGAAGATGCTATCAATGATGTACACAATGTCAATCAGTTGCTGGAAGAGGCAAGAACACAAAAACATTGTTGCTTTAAGCACTGCCCAAATTGGATTTGGCGATACCATGTTGGCAAAAAGTTAGCTAATAAAACTATGCACCTCGTAAAGGTCATTGAAGAGGGTAGAAAATATGTGCCATTTGACCGCATCGCTACGCTTCCTTCAAACACCCTTGATATGCTTTCAGAAAAATGCATGAATTTTGAGAGTAGACAATCTGTTTATGAGAAACTACTGGATGCAGTGAAAAATAATGATGTTTCCATGATTGGGTTGTATGGAATGGGAGGTTGTGGTAAAACCACATTAGCAATGGAGGTTAGGAAATTAGTAGAAGCAGAGCATCTTTTTGAAAGAGTTCTTTTTATACCTGTTTCAAGTACGGTAGAAGTTCGGAGGATTCAAGAAAAGATAGCAAGTTCACTGCAATTTGAATTTCCAGAAACCGAAGAAATGCAGAGAGCCCAAAGATTGTGCTCAAGATTAACTCAAGAGAAAAATATTTTTATAATTCTAGATGATGTGTGGGAGAAGCTTGAGTTTGGTCTTATTGGGATTCCTTCTTCTGAACACCATAAAGGATGCAAGATTCTCATTACCAGTAGATCAGAAGCAGTTTGTACTTTAATGGATTGTCAAAGAAAGCTTTACTTGCCAATTTTAACTGATGAAGAAGCATGGACTTTTTTCCAAAATAAAGCACTTATATCAGAAGTCACCTCTGATACCTTAAAGGATCTGGGAAGACAAATTTCCAATGAATGTAAAGGATTGCCTGTTGCCATTGCAGCGGTTGCTTGTAGTTTGAAGGGAAAAGCGGAGACGGTATGGAAAGTTGCATTAAATAAATTAAGACGTTCGAAGCCAATAAATATTGAAAGAGGTTTGATTGATCCCTACAAATGTCTACAACTGAGCTATGACAATTTAGATACTAAAGAAGCTAAATCACTTTTCCTGTTGTGCTCTGTGTTTCCTGAAGATTTTGAAATTAATATTGAAGTTTTAACAAGATGTGCAATAGGATTAGGTGTAGTTGGAGAAGTTGACTCATATGAAGAGGCAAGGAGTGAAGTGATTGAAGCTAAAATTAAGCTTGTTAGTTGTTGTTTATTGTTGGATGCAGATGATGAATGTGTCAAAATGCATGACATAGTTCGTGATGTGGCCCACATAATAGCAAAAAATGAGAATAAGATGATCAAGTGTGAAGTGGAGAAAGATGTTATAGTGGAACAAAATTCGGTAAGATATCTATGGTGTGTGAAATTTCCAAATGATTTGGATTGCTCCAATCTTGAGTTTTTATGCTTACGGACAAAGATGAAAGAATTTGATGGAATTTTCAAAAGAATGGGAACGCTCAAAGTTTTGATTCTTGTCAACAATGAGTATGGAAAAACACGATTGTCAGCAATATCTTTGAAAACATTAACAAATCTTCGTTATCTATTCATTGAGAATTATGAATTGAGCGACTTCTCATTTTTAGGCGGTATGAAGAATCTTCAAAGTCTCTCGTTAAATCATTGTTTACTGCCTTCATTCCCTGAATTACAAACCGATGTTGCAATTACACTAAAATTGTTAGAGTTGAATGAATGTGACATTAAAGTGAAGAATTTTGAAGTGAGGAAGAGAATTCCGCTTTTGGAAGAGTTGTACATTATTGATATTAAAGGAGAATGGTTTGCTAACAGTGAAGACAATATTGAATTCTTTAAGACGTTTAGCATTCCCGAAACACTCCAAAGGTATGGAATTATATTAGGATCCCGTTATAAAATTCTTTATTGTATATTTGATCATTATAATGATAGAGATATGTTCATTCATGGAAGAACATTATTACTTAACTATTTTGACATATCAAATGAGGTAATAAAGGGTTTGGCAAAAAAAGCAAAGCATCTGTTTGTAGGAAAAATTCATGGAGGCGCAAAAAATATGATCCCTGATATATTTCAAATCGAAGGAGGTGGTTTGAATGAGTTGAGTATGTTGCAGATACGTGATTCTGAAGAGTTAGAATGTTTGATTGACACAAGTAGTCACTCGAGTGAGGTGGTAACTCTCTTCTCCAAGTTGCATACGCTGAGAATGGAGGGCATGGAAAATCTAAAAGCTATATGGAATTGTTTCCTTCCTGCCAATGGGCCTTTTAAGAACTTAGAGAAGTTGGATTTAAGTGATTGTCGACGGTTGACATTTCTCTTCACATATGTGGTTGCTCGAAATTTGGTAAAATTGAAAATATTAAAAATATCAAGATGTGATGCACTAAAGCATATAATAACATATGAAGAGAAAGCAGAGAAAAGTGAAGATGAATTCACCAGTGGGCATCCTGTACAAATCTTCCAAAATCTTCAGAAAGTAGAGGTAGATAGCTGTCCAGAATTAAAACATATATTCTCGGCCAACATTGTTGGAGGGTTAGGTCAATTGAAAGAGCTCAAGATAGAAAGATGCGACATGCTAGAACAAATAATTGGAGATATTGTTCCATTAACAGAGCAGGATGATGAAATCGTTGAGGAAGGAACTCTATACAGCCTTGTAAGCCTTAAGATAACATTTTGTGGAAAGTTAGGCTCAATTTTTACAGCATCTATAGCTAAGACCCTGACTTCTATGGAAGAATTGTTCATAGAAGACTGCAATAGTTTGAAGGACATAGTAACTCATGAAAGGGTCAATAAAAATCAGAAGGAAAGCATTGTTGAGGATGAGCATGATTGTGAGAGTGATATTTCAATCTTCCAAAGTTTGAAAAAGCTACATATCAGTAATTGTGACTTATTGGAGTGTATATTCCCTGTTTCTTTTGTTGGAGAATTGAATGATATAAGAAATAAAGAGGCTGCTGATTTGAAAGACTTCTCTAGTCGAAATAATACTCAAATTGAGCTTCCTGCTTTACAAGTACTTGAACTTGATCATATTCGGGATAGAACCATTGTTGGAAGTTATCATGTGATATGTCCCTCCTTAAGAACACTATCATTGGATATTGGGAGATATGTTGGGTTTTTCAACGTAAATTGTTCAACAGATGCTTCAGAAGCTACCAAAAGGGATTTTATTGCAATCAAGATATCGAACTCAGATTTTGATCCGCCGGTTGAAAGTGTTGAATGTCTTTCAAAACAACCGCATGGTTTGAACTTGATTATGATACACAATATTAGGGAGATTAAACTGAAAGGCTTTGATAAGGCAAGGTACCTTTTTAAACTGTCCATTGCTTCATCATTGATGATGTTGGAAATTTTGAGTATTAACAAATGTGATGGACTTGAGTACATTATAGACACTGATGATGATGAATATGGCAAAGAGAGTATGAAAGCTATCTTTCCTAACTTAAAAGAGCTCTCTGTGCGTGATTGTGCCCAACTGAAATATATGATTGGGCAATATGACGTAGCTAATAAGGATAATAAGGAGATTCATATTCAATTCTCAACATTGGAAATACTTTGTCTTGATGATCTACCAAATTTTGTTAGCGTTTGTTCTACCAACACTCTCACTGTGACGTGGCCATCTTTGAAGGACTTTCAGTGTCACAGTTGTTTCTATCCATTTTATGGTTCTGTTAGTTGTTTGACGATCCCTACGTATACGAAGGATCCGAAAGGGATTCAGAACCCTCTCCTCACTTTGCAAACTCTAAAGATAACGGGTTCTGATGCAGAACGTATTTTTTGTTTTAATGAAGATGAAATGATTGGCCAAGAAGTGAGTTTAAGGTTAGAGAAGTTGGTGTTGTATAAACTACCTCAAATGACTTATATTTGGGTGGGTCCCAACAATTCACTTACTCTCCAACATCTTACCACATTAACAATATGGGAATGTGAAAAGTTGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATCCTTACCAAAGTTGAACAACATAACCATTAAACAGTGCATGGAATTGAAGCAGATCTTCGAAGAAGACGAGTCCAATCTTCATTCTATAGATGGAGGCTATGAAAAAGAAGCTTCAAAGAATAATTTTACCTTTCCAAATCTTGAAAAACTAGAAATAATTGAATGTGCGAAATTGGAAATAATCTTTCCAAAGTCTGTTTTAAGATGCTTACCAAAGTTGAAGCTTTTGAAGATAAGAAAATGCAAAGAATTAAGACAAATCATTGAAGAGGGTGTGGAGGATAAAAATTTGTCTAATATTCTTTCTCCTCAACCATGCTTCCCAAAATTAGAAGCATTGCATGTTGATGATTGTCACAAGTTGAAAAGATTATTCTATGGATCTGCTTCAAATGACCTTCCCAATCTTCATCTTCTGGCCATAAATGGAGCCAATGAACTAGAAGAGCTTGTTGGATGTAAAGAAGGAAAGATTAAAGTTGAGCTTCCAAGACTCAAACTTTTAATATTTACGTATCTGGAAAACTTCAGTCAAGAGATTGAATTTCATAATTTAAAGAATTGCATTGTCTACAAATGTCCAAAATTATCTTTGACTTCAACAACTACTTTTCAGGAGCTCAATAAAGATTTTCCTTTCGAAGATTTCATAAACACAGAACTTGCTAGTTGGGAATTTGAACACATAGTAAGAATTTCAACTATTATCCATAGCAGTGAGTTCACTTCATCACAGGACTTTGAGGATATTAAATATTCATCCAATGGAGTTTTACACATTCGCATTGGACGTGTTGTTACAACTCACTTTGAGTCTGCTGGTGAGGACAAACTTGCGCTAGATTCCAAGGTAGTTGAACAAGATGATAAGATGAATGAAGGCAAGCCAGGAACAGTGGCAAGCCAAGGAGTCCAAGTAGAAGAAGGGTTGAACCTTTTGCATAAACAAGAAGGAATAGATGTTGTTCCTAACAACAATATTGACATTTCTTCAGCTTCTGCAGATATCCGTACAAGATTGGGAGCATATAAACATTTTGTTGATCTGGATGATGCACAGATTTCTCAGGCTGTTGAAGAAGGTGATGGGCCTAAGATTAGCTTGGAAGAAGGTTCTGACTTGGTTGATAAAGAAGGTGAAATAGGTGTTGTTTCTAATCACCACATTTTGGCTCCGAGAAATGAAGAAGCAGAGCAGGAATTTGTTGCAGAAGTTTTCACTTCAGAAATACCAAGAATAGCAACATCATTAACAAACTCACAAACAGTTGAAAAGCCAACACCAACACCCTCAAATCCATTGGTGGACACACAGCAGACTAGTGAACCGTGTCTGATGAAGCAGGAAAAACCAGTTGGTGAAATTCCTAAGGGTGAAATTACCAGCAGCCAAATTGAGGCACGCATTGCTAAAGAAAGTGAAGGCCATCCTAAAATCATTAAAGACTTTGGGGCCAATGATATCAGGAGTTTATTTGCACCAGTTGTTGTGGGGAAAGAGGGTGAAGATAAGCTAGTTGGAAAGACCCTTGCTGAGTTAGAAAAGTATCTGAAGATGTCTCTGAAGGATATAGTTAGCTCTCAGACTAACAGCCTTTGCCTTTTGTCTGCTCTTAATTTCCTATCCAACCTTCCTTTCAAAGATGCCAAAGTATCAGATGGACTCCAACATATTATAAACACTATGCACCGAGACTTCCCAAGCATTTTATTCTCCTTTAAGCAAGGCTTTGCCACCACTGACAAGTTGGCAGAACTTGAAGCTCGTGCGAATGAGGTGACCATTAAAAAGAATTTATATGATGAACTTCAACGGAAGGAAGTAGTTTTGAAGGAACAAATCATTAGGTTGAAGGAAGAAATAAGAGTTTGTGAGGTTGCCTTATCATCCCTGGAGGAGGAAAAAAATAAATGCATTGCAGAAACTGTAGAATACAAAAAGGAACTTGAAAATGCAAGGAAAGACGAATCTCAAATGTTGGAGTTGGCTCATAAATGGTCAGTTCTGTGTAGTCAATATGAACTCAATCGCATGGCTGCTACAAATCCCTCGTGA 6222 0.3629 MESLLGFASSVSRDLVCGALNQLRYPCCFKNFVKKLEEEESNLIVTRDSVQKFVTDAAKKQARKPSEIVDKWLEDAINDVHNVNQLLEEARTQKHCCFKHCPNWIWRYHVGKKLANKTMHLVKVIEEGRKYVPFDRIATLPSNTLDMLSEKCMNFESRQSVYEKLLDAVKNNDVSMIGLYGMGGCGKTTLAMEVRKLVEAEHLFERVLFIPVSSTVEVRRIQEKIASSLQFEFPETEEMQRAQRLCSRLTQEKNIFIILDDVWEKLEFGLIGIPSSEHHKGCKILITSRSEAVCTLMDCQRKLYLPILTDEEAWTFFQNKALISEVTSDTLKDLGRQISNECKGLPVAIAAVACSLKGKAETVWKVALNKLRRSKPINIERGLIDPYKCLQLSYDNLDTKEAKSLFLLCSVFPEDFEINIEVLTRCAIGLGVVGEVDSYEEARSEVIEAKIKLVSCCLLLDADDECVKMHDIVRDVAHIIAKNENKMIKCEVEKDVIVEQNSVRYLWCVKFPNDLDCSNLEFLCLRTKMKEFDGIFKRMGTLKVLILVNNEYGKTRLSAISLKTLTNLRYLFIENYELSDFSFLGGMKNLQSLSLNHCLLPSFPELQTDVAITLKLLELNECDIKVKNFEVRKRIPLLEELYIIDIKGEWFANSEDNIEFFKTFSIPETLQRYGIILGSRYKILYCIFDHYNDRDMFIHGRTLLLNYFDISNEVIKGLAKKAKHLFVGKIHGGAKNMIPDIFQIEGGGLNELSMLQIRDSEELECLIDTSSHSSEVVTLFSKLHTLRMEGMENLKAIWNCFLPANGPFKNLEKLDLSDCRRLTFLFTYVVARNLVKLKILKISRCDALKHIITYEEKAEKSEDEFTSGHPVQIFQNLQKVEVDSCPELKHIFSANIVGGLGQLKELKIERCDMLEQIIGDIVPLTEQDDEIVEEGTLYSLVSLKITFCGKLGSIFTASIAKTLTSMEELFIEDCNSLKDIVTHERVNKNQKESIVEDEHDCESDISIFQSLKKLHISNCDLLECIFPVSFVGELNDIRNKEAADLKDFSSRNNTQIELPALQVLELDHIRDRTIVGSYHVICPSLRTLSLDIGRYVGFFNVNCSTDASEATKRDFIAIKISNSDFDPPVESVECLSKQPHGLNLIMIHNIREIKLKGFDKARYLFKLSIASSLMMLEILSINKCDGLEYIIDTDDDEYGKESMKAIFPNLKELSVRDCAQLKYMIGQYDVANKDNKEIHIQFSTLEILCLDDLPNFVSVCSTNTLTVTWPSLKDFQCHSCFYPFYGSVSCLTIPTYTKDPKGIQNPLLTLQTLKITGSDAERIFCFNEDEMIGQEVSLRLEKLVLYKLPQMTYIWVGPNNSLTLQHLTTLTIWECEKLEVIFPKSVVRSLPKLNNITIKQCMELKQIFEEDESNLHSIDGGYEKEASKNNFTFPNLEKLEIIECAKLEIIFPKSVLRCLPKLKLLKIRKCKELRQIIEEGVEDKNLSNILSPQPCFPKLEALHVDDCHKLKRLFYGSASNDLPNLHLLAINGANELEELVGCKEGKIKVELPRLKLLIFTYLENFSQEIEFHNLKNCIVYKCPKLSLTSTTTFQELNKDFPFEDFINTELASWEFEHIVRISTIIHSSEFTSSQDFEDIKYSSNGVLHIRIGRVVTTHFESAGEDKLALDSKVVEQDDKMNEGKPGTVASQGVQVEEGLNLLHKQEGIDVVPNNNIDISSASADIRTRLGAYKHFVDLDDAQISQAVEEGDGPKISLEEGSDLVDKEGEIGVVSNHHILAPRNEEAEQEFVAEVFTSEIPRIATSLTNSQTVEKPTPTPSNPLVDTQQTSEPCLMKQEKPVGEIPKGEITSSQIEARIAKESEGHPKIIKDFGANDIRSLFAPVVVGKEGEDKLVGKTLAELEKYLKMSLKDIVSSQTNSLCLLSALNFLSNLPFKDAKVSDGLQHIINTMHRDFPSILFSFKQGFATTDKLAELEARANEVTIKKNLYDELQRKEVVLKEQIIRLKEEIRVCEVALSSLEEEKNKCIAETVEYKKELENARKDESQMLELAHKWSVLCSQYELNRMAATNPS 2073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00002 2073 Coils Coil 73 93 - -
Vimu11g00002 2073 Pfam NB-ARC domain 161 395 IPR002182 GO:0043531
Vimu11g00002 2073 Gene3D Ribonuclease Inhibitor 865 1118 IPR032675 -
Vimu11g00002 2073 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1310 1476 - -
Vimu11g00002 2073 SUPERFAMILY L domain-like 465 1027 - -
Vimu11g00002 2073 FunFam Probable disease resistance protein At1g61300 147 302 - -
Vimu11g00002 2073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 409 IPR027417 -
Vimu11g00002 2073 PRINTS Disease resistance protein signature 806 822 - -
Vimu11g00002 2073 PRINTS Disease resistance protein signature 342 356 - -
Vimu11g00002 2073 PRINTS Disease resistance protein signature 176 191 - -
Vimu11g00002 2073 PRINTS Disease resistance protein signature 249 263 - -
Vimu11g00002 2073 SUPERFAMILY L domain-like 1336 1579 - -
Vimu11g00002 2073 Gene3D Ribonuclease Inhibitor 1137 1598 IPR032675 -
Vimu11g00002 2073 Gene3D - 142 304 IPR027417 -
Vimu11g00002 2073 Gene3D - 307 398 IPR042197 -
Vimu11g00002 2073 Gene3D Ribonuclease Inhibitor 701 864 IPR032675 -
Vimu11g00002 2073 Coils Coil 1972 2044 - -
Vimu11g00002 2073 Gene3D Ribonuclease Inhibitor 497 665 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00002 Vimu-Chr11 32598 42162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00002 158 578 WRKY Transcription Factor Family AT5G45050 25.957 2.70e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00002 - - vra:106753628 2833.9