Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03770 ATGGAATATGGAGGGTTCTCAGATATTTTTGCCCCAGAAACGGAGTTTATGGATGAGCTATTTGCAGAAGGATGCTGGGTGGAAACAAGAGTTGGATGTGGCACGGAGGCTTCAAAGTGGAACAGGAGCATGGAGTCGAATGGGGCGCACATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGGGAATCCGGGGCCATCTTCGTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTCCCCGCCCGGAGAGGATGTGAAGTAGGGATTCATCACCATCAGGATTTCCCATACACCCTCGACTATACTAACAATGGAGATGCAACAAGATCCTTTCAGTTTCACGAGGAGTGGCTTTCTGATCACTGGCCTCTCAACATTCGCTTCCTCAGAACTCATGACTACCCCCGCCTTCACCACTACGATCTACGTCCTGGATCTCTCGCCATTCCCGTCTTTCAGAGAGGCACTGGAATTTGTCTCGGTGTTGTCGACATTCTCATGCCCAACAACGTAAACCCGGAACTTCACAACTTTCAGGGTGTTGATTTTAGGAGCCCTTCTCTTCAGAACTTCATTCCACCAGCCATGACCGTGAAGGGTTTTGACGAGTTATACCAAGGTGCATTGAATGAGATAGTACAAGTGTTGACATGTGTGTGCAAGGCGCATGAGTTGCCTTTGGCTCTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGACATTCAAACGATGAGAATTATGTGTCGACTGTGGATCCAGCAAGCTTTGTGGCAGATGTAGATGTATTGGGATTCCTGGAAGCCTGCTCTGAGTACCACCTTTTAGGGGGTCAAGGAGTGGTTGGAACAGCCTTCACAACCTCCAAGCCTTGCTTTGCAAATGACATCACTGCCTTCACCAAGGCTGAATATCCTCTCGCACACCATGCAAACATGTTTGGCTTGCATGCCGCTGTGGCCATTCCTCTCCGGAGTGTCTCCTCTGATTTTGTCCTCGAGTTTTTCCTCCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGATACTCAATTCCTTGTCTATGCTGGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTACTGGACAAGGAGGAGGAGGAGGAATTGGTGTCACACCATCATCATCATCTTAGCAAAGAAATGGAATCATCATCATGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCGGTGTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAGGTGACAACCAACTGCAATGAACAGGTATTCTCGGACTTGGAAGGAACAGGCGGTGCTGGTGTCGGTGGCCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAGAAGACAATCAGTTTGCCGGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGGTACGTGGGAGACATATACATGTTCATTCATATTCTATCAATTTCCTCATTACTATTATAGTGTTGCTATTCACAATTCTCTTCTTCTGATTGCAGTATGTCCTACCACTTTAAAAAGAATATGCAGACAACATGGGATTACGAGGTGGCCTTCAAGGAAAATTAAAAAGGTGGGGCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTACACCAGTTTTCCGGAGTTGAGTGCCAATGGTGTTTCCGAATCACCCAAGATAAACAGTGATAATTCCAAGTTTTATTCCGAAAATGGGTTGTTTAGTAACCAAGGAGTTACTTCAACTTCGTCTTGCAGTCAGAGTTGTAACCCGAGTTTGAACCAATCAACCACTCTGATCAACAGCAACAATAATAACAATCCTGAGATTATTCTGATGTCAGATAAGCAATCAGTAGTTGGCGCATCAATGCAAGTCCACCATCCTCCTATTCCCATTTCCATTCCCATTCCCATTCAAAGCCTGGACGCTCTACCTCCCCTGCCCCAAACCAGCAGTGTCTGGAACACGGGCGGTGGTACTTTCAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGCGGATTCAGAGATTTGCAGATGGAAATTGCAAGACGTTTCAATCTGAAGGAGATGAGCAAAATTCAGGTGAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTAACATGCGATGCAGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAATCATTCAACTAATGCATTTGGCACCACCAGCCCCACTTAA 2460 0.4687 MEYGGFSDIFAPETEFMDELFAEGCWVETRVGCGTEASKWNRSMESNGAHIIFEEESEAESLMVGKRWWIGPRGNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCEVGIHHHQDFPYTLDYTNNGDATRSFQFHEEWLSDHWPLNIRFLRTHDYPRLHHYDLRPGSLAIPVFQRGTGICLGVVDILMPNNVNPELHNFQGVDFRSPSLQNFIPPAMTVKGFDELYQGALNEIVQVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNDENYVSTVDPASFVADVDVLGFLEACSEYHLLGGQGVVGTAFTTSKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSSDFVLEFFLPKDCHDTQDQKQILNSLSMLVQQACRSLHVVLDKEEEEELVSHHHHHLSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSDLEGTGGAGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGGTWETYTCSFIFYQFPHYYYSVAIHNSLLLIAVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSANGVSESPKINSDNSKFYSENGLFSNQGVTSTSSCSQSCNPSLNQSTTLINSNNNNNPEIILMSDKQSVVGASMQVHHPPIPISIPIPIQSLDALPPLPQTSSVWNTGGGTFRVKATFGDEKIRFSLQPNCGFRDLQMEIARRFNLKEMSKIQVKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGTTSPT 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03770 819 Gene3D - 721 803 - -
Vimu10g03770 819 SUPERFAMILY CAD & PB1 domains 710 805 - -
Vimu10g03770 819 MobiDBLite consensus disorder prediction 470 492 - -
Vimu10g03770 819 Pfam PB1 domain 720 802 IPR000270 GO:0005515
Vimu10g03770 819 SMART PB1_new 720 803 IPR000270 GO:0005515
Vimu10g03770 819 ProSiteProfiles PB1 domain profile. 720 803 IPR000270 GO:0005515
Vimu10g03770 819 ProSiteProfiles RWP-RK domain profile. 482 595 IPR003035 -
Vimu10g03770 819 CDD PB1_NLP 721 802 IPR034891 -
Vimu10g03770 819 PANTHER PROTEIN NLP8 60 804 IPR045012 GO:0003700
Vimu10g03770 819 Pfam RWP-RK domain 496 575 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03770 Vimu-Chr10 46393405 46396012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03770 3 816 NLP Transcription Factor Family AT2G17150 37.927 3.40e-180 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g03770 PB1 5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03770 - - pvu:PHAVU_009G115800g 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03770 10 46393405 46396012 Vimu10g03770 10 46393405 46396012 ECH