Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03757 ATGACACCGCCCGCCACTCTTTGCCTCTCCTCGGTTCAATGCAACGCCTCTACCATTTCTGATCCGATTGGGGCAACGTACAAAGTGGCTAACAAAAGGCTGAGTGTAATCTGGGGTGGTGCTAACTATGAATTGGGAATTATGCTAGCCAAGGGAGAGTTTCCCAAGTGCCAGAGTGGTGATCTGATTTTATGGTTGGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTATGTCTCGAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGTCAGATAGAAGGAAAGCTGATGATCCTTACCGCTCAAGCTCAGGTCAGACATCAACTGCTAGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTTCAGTCGTAAGCTCTGCTGCACATTTATTGTCAGCTGAGGAACAACCTGCTGGTTTTCGAGTAAATCATGAAATGGAAGTGGATAAAAATCCTACCACACCTTCAGTCTTGTGTCATGGAGTAACCAAAGATAGCATTCATAAAAACTTAGGTATTAGCAATGTAAATGGTAGTTGCTCCTCTTCAAAGGCAGATATGGAAACTGAAATGAATGGAAATGGTGAATGGTCCACCTCTAGTGTAATAGTCATGGATTCCACAAGGGAAGAAGTGACAGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTGGAGAATATTCTCCTGAAGACAATGTGGCTTCTGGGGAAGATACTGTCATCACGGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGATCGTGTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTCGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAAAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTCAAGGGTGAATCAAATCCCATACTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGAAAAGGATTTCAAGTAGAAGTTCTTGATTGGTCAGGTCCGATAAAAAGTTCTAGTTTGTTCTTTCACTTTGAGTGGCAACTTTGGGGTAATAGAGCTAGTTCTCATGGAAGGTTACATCCATGGAGTGACAGTGGTCAAACACCCCATGAAGGTGCATTTGTGGATTTAGGGTCCAGTGCTTTGATGAGGCTAATTGTCGATGTTAGGATCCCAATATTATATAAAAGGGTAGGGCTTTTGGTGCTGAATTTGTGTACTTTGGAAGACATTCTAATGATTAATGAAAGAGAACTTTCCAAAATTGGAACACATGTAAGTCAATGGAACGATGAAGATACCCTTCCTGAACCATTAGAAATTAATCCTTCAGACTTCAATAGACTGCTGGTAAAGGAAGAGAATACTCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAGCTAATGGAACTATATGTGGAAAATGGCGCAGGAAAAAGGCTGCGGAGGAAGAAGTAGAGGAGTCTCCCACACTGAGTTTGGTATGTCTGGATCCTCAATTTGTTTGCCTACGGTCTTTTCTCAAACAAATTGCTTTGAACGAGCATGAAGAACATGATTGTGGGCAAGTGCAGCTATGGTCAAATTATCACAGTAAATACGGGGGATGTGGTGATGAACCTCAAGTTCAACAAGAAGAGTTTATATCTAGGATTATATGCCCTATTTGCATCACAAAAGGAAGTAACTGGGAGAGGACCAAAGGAAGTTGTTGGGAGAAGATGAATACCCCAAGAAATAGTGCCTTTGAGGCCATGGCTCTAAACTCTGCCGTTGCACTTGATCTCACCACAACATTTTTGTTTCTTGCACTTTTAAGTGGCTAA 2094 0.414 MTPPATLCLSSVQCNASTISDPIGATYKVANKRLSVIWGGANYELGIMLAKGEFPKCQSGDLILWLVEAGLCYVSDDGKDVLCDRMPSGETWQVCLECNRYPLDWCRKAEPVESDRRKADDPYRSSSGQTSTASIMTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASANYPSVVSSAAHLLSAEEQPAGFRVNHEMEVDKNPTTPSVLCHGVTKDSIHKNLGISNVNGSCSSSKADMETEMNGNGEWSTSSVIVMDSTREEVTEKDFCINTLRTHGLLGEYSPEDNVASGEDTVITGNNCCSRSCKICDRVDSSLNMLLCDHCEDAYHPSCYNPRSKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGESNPILLMLRDTKPYTSSVRVGKGFQVEVLDWSGPIKSSSLFFHFEWQLWGNRASSHGRLHPWSDSGQTPHEGAFVDLGSSALMRLIVDVRIPILYKRVGLLVLNLCTLEDILMINERELSKIGTHVSQWNDEDTLPEPLEINPSDFNRLLVKEENTRSPAKLSAIGNWIQCQTVIDRANGTICGKWRRKKAAEEEVEESPTLSLVCLDPQFVCLRSFLKQIALNEHEEHDCGQVQLWSNYHSKYGGCGDEPQVQQEEFISRIICPICITKGSNWERTKGSCWEKMNTPRNSAFEAMALNSAVALDLTTTFLFLALLSG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03757 697 ProSiteProfiles Zinc finger PHD-type profile. 304 354 IPR019787 -
Vimu10g03757 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 365 IPR013083 -
Vimu10g03757 697 SMART PHD_3 306 352 IPR001965 -
Vimu10g03757 697 MobiDBLite consensus disorder prediction 114 141 - -
Vimu10g03757 697 SUPERFAMILY FYVE/PHD zinc finger 293 356 IPR011011 -
Vimu10g03757 697 MobiDBLite consensus disorder prediction 124 141 - -
Vimu10g03757 697 ProSitePatterns Zinc finger PHD-type signature. 307 351 IPR019786 -
Vimu10g03757 697 Pfam PHD-finger 307 353 IPR019787 -
Vimu10g03757 697 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 256 358 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g03757 PHD 2.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03757 - - gmx:100813057 567.385