Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03750 ATGGTGAATGGCGAACACAACCTGCCAAAGCAACCCAACGTTAACGTTTCCGATCATCAGAGTACGTCCAAGAACCACATCTCACCCAACCATCGCAGGTTTCGGTTCAGAAGGAGGAAAACCACCGCTGCTAGCCCGATCTCATCGCTCAAACTCCGCGCATACGACATCGACGCCACCAACAGTCCCTACTACAAGGGTCTGACTGACCAGTCCCTTGCGATTGTGGACACCATACCCTCCTGTGCTCAATCTCATCCTCACACCCCTTCCTCCGACCTTCTTTCCAGTCCTTATTACAAAGGCCTTACGGACTATTCCCTTGTTATTCGTCCCTGGACTCCTCACAACCATCCTCTTCCTTTCCCCCACAACTCCCTTTCCTACACCCCTAGTCCTTACTATGCTGGTCTTCTCACTCACTACACCATTCTCTTTCATGCACGCTCAATTCAACCTTCTTTCACTGCAAACCTTCCAAACATCAAGACCTACCCTACTTTGAAGGACTTGATGGTCGATCCTCGTCACGTTGGCTTTGCTACTCAAGAAACTGATCAAGTTGGCAATCATGCATTGGAAGAACTTGGGGAGAAAACTGCTGCTGTAGTTGATCAAGAGAAGTCCCTGAGAGAGAATAATGATGTTGATGTTGAGATGGTGACTGAAGAGAAGGCCTTGGGGGAGAGTGTATTCGAGCAGGCTACTGATGAGGTTGAGGGTGTGTCAAAAGAAGCAATCTTTGATACAAAGTTTATGAGTGATGATGATGTCGTTGAAGAGAAGCCATTGGGGGAGAAATCATCGGAAACAAGCGAGATTGATTTGTGGAAGAAAGAAGTGTTGCCTCTTGTTTCATCAGAAGCAGTTGCTGTTTCGCCTGAATCATGTAAAGAAGGAGATGTGTATGATTATACATGGGCAGCCAAATACCAACCCATGGCCTTGGAAGAGTTCATCTGCAACAAAGATATAGCAAGTCAACTCAAAACAATGGGAAAAATGAAATTTTTGTATTCGATAATTGCACAGGTAGAAGGTGGTTGTGGGTGCAGCCACTTTATATTCGAAGGACCACCAAGTGTGGGGAAGAGATCCATGATAAGGGCTATGCTTCGAGAGGTATTTGGCTCCGACAGGGTCCAGGTCGAAGAAGAATATAAAAACTTCATTTTGAAGGGAGAAATGGTTGATAGTGTGCAAGTGCGCGTAAAGAAATCATTCCATCATGTTGAGGTGAATCTGTCAGAGACAAATGGATATGAAAAACATGTAATTGTTGATTTATTCAAGGAAACATACGGGCAGGTGATAGATAACTCGCAACCTTGTTGCCCAGAAAACTGCAAAGCAATCGTTTTGTACGAGGCGGAGAAGCTGTCGATAGAATCGCTGTTGTATATTAAGTGGCTGCTAGAGAAGTACGAAGGGTGTAATAAGGTTTTCTTCTGTTGCTCCGATGAATCTAAGCTTCAACCTGTGAAGCCACTTTGCATCACTCTCCGCCTTTCATCGCCATCAACCCAAGAGCTAGCTACGATTTTGGAAAACATTGCAATAGCAGAAGGAATACAGTTATCACGCCACTTGATCGATACCATAATTTTGAGGTCCAACAACAACCTACGCCAAGCCATTCGTTCGTTAGAGGCCACTTGCCGAAACAGGGATGCTGTCAAAGAGAACGACGTGATTCTAACTGGTTGGGAACAAGATATTTTGGATATTGCCAAAAAAATAATCCAAGAACAAAGTCCACGACAGCTGTACGCCATTCGTAGAAAGCTACGAAGTCTTATGAGCCATGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTACCAGAATTAACCAGTCTTGTTCATCACTCGCTACGCCCAGGGATTGCCAAACTCGACAGGGACTTCATGAGACCCAGTGAAATCAAATTTGAAACTATGAAGCAGCACTTGTGTCATGCTCAAAAACAGTCCGAATCTGATGAGAAGAACACTGATTCAACAAAAAAGAATGCCTTAACTTACTTAAAAGTAGAAGAGTTTATAGCGAAAGTGATGAGCTGGTACAAGAATTGGTCTGAAAAAGACACTAAGCTGTAG 2100 0.4419 MVNGEHNLPKQPNVNVSDHQSTSKNHISPNHRRFRFRRRKTTAASPISSLKLRAYDIDATNSPYYKGLTDQSLAIVDTIPSCAQSHPHTPSSDLLSSPYYKGLTDYSLVIRPWTPHNHPLPFPHNSLSYTPSPYYAGLLTHYTILFHARSIQPSFTANLPNIKTYPTLKDLMVDPRHVGFATQETDQVGNHALEELGEKTAAVVDQEKSLRENNDVDVEMVTEEKALGESVFEQATDEVEGVSKEAIFDTKFMSDDDVVEEKPLGEKSSETSEIDLWKKEVLPLVSSEAVAVSPESCKEGDVYDYTWAAKYQPMALEEFICNKDIASQLKTMGKMKFLYSIIAQVEGGCGCSHFIFEGPPSVGKRSMIRAMLREVFGSDRVQVEEEYKNFILKGEMVDSVQVRVKKSFHHVEVNLSETNGYEKHVIVDLFKETYGQVIDNSQPCCPENCKAIVLYEAEKLSIESLLYIKWLLEKYEGCNKVFFCCSDESKLQPVKPLCITLRLSSPSTQELATILENIAIAEGIQLSRHLIDTIILRSNNNLRQAIRSLEATCRNRDAVKENDVILTGWEQDILDIAKKIIQEQSPRQLYAIRRKLRSLMSHDVPPDFIYKSLVPELTSLVHHSLRPGIAKLDRDFMRPSEIKFETMKQHLCHAQKQSESDEKNTDSTKKNALTYLKVEEFIAKVMSWYKNWSEKDTKL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03750 699 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 306 652 - -
Vimu10g03750 699 Gene3D - 305 506 IPR027417 -
Vimu10g03750 699 SUPERFAMILY post-AAA+ oligomerization domain-like 568 628 IPR008921 GO:0003677|GO:0006260
Vimu10g03750 699 Gene3D - 507 567 - -
Vimu10g03750 699 MobiDBLite consensus disorder prediction 1 41 - -
Vimu10g03750 699 MobiDBLite consensus disorder prediction 26 40 - -
Vimu10g03750 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 564 IPR027417 -
Vimu10g03750 699 Gene3D - 568 689 - -
Vimu10g03750 699 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03750 Vimu-Chr10 46267178 46271522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03750 307 692 Core DNA Replication Machinery Family AT5G27740 28.645 5.84e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03750 K10756 - gmx:102664389 794.267