Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03748 ATGGAGATTGATCTTGAGGTACCTATATGTGAGCATGAGAAGCTTAATATTGGATCTAATGGAAATAATGTTACAGATACAACATCTGATATATGTGTTGAGGAGCATAAAATCAACCCTTCGTCAATGACTGCACACTGTAAGGAAGTGTTAAGTGAAAAAGCTTTCTGCTGTCAGGATCCGGTGGATTTGAATTCTAATCAAGGGGATGCAATTGATAAATTTCCCATTAAAGAACCAGAAAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCTCGGTGGGTTTTGGCATCACGATAAAAGCCAGTCGACGCTCGAAAAAGTCAGGAAAATTTATTGATATTAAAATTGTTTGTTCTAGATTTGGAAGTAAGCGTGAGTCCGGTACAGCTGTTAATTCACGACCATGTACAAAGACCGACTGTAAGGCTGGAATGCATATGAAGAAGAAGCTAGATGGGAATTGGATTATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCCGATGATTTTGTCACGGGACGTAGCAAACAAATAAGTAATCTAGCTTGTCGTAAGAAGGGCATGCAATTGGCTCTAGAGGAGGGAGATGTGCAGTTGATCATCGAATACTTTATCTCCATGCAGTGTGAAAATCCGAACTTCTTTTATGCAATAGACCTGGATCAGGATAGACATTTGAGAACTGTATTTTGGGTTGACTCAAAAGGAAGATTTGATTATAAAAAGTTTCATGATATTGTGTTGATTGACACTTTTTACCTGAAAAACAAATATAGAATTCCTTTTGTTCCTTTTGTCGGGGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAAGAGTCTGTTTCAGCTTTTACGTGGTTAATGCAAGCATGGCTCAAGGCAATGAGTAACCTACCTCCCGAGGTGATTATCACAGATCATGAGCCATTCTTGAAAGAAGCTGTCATGGAAGTGTTTCCAGATAAAAATGAGACATTTGAAGAGAGATGGTGGAAGTTGATGAATAGAATTGAATTAAAGGATGATGAATTGGTTCAGTCATTGTATGAAGATCGTAAAAAGTGGGCGCCTACATTCATGCGGGACATTTCTTTGGTTGGATTATCAACAATTGAAAGATCTGAGAGTGTATCATCTTTCTTTGACAAGTATATCCGTGTTGATTCTACCTTTAAGGAATTTATTGAACAGTATAAAGTTTTCTCTGGAGACTGTTTTGACATTGAAGCGAAAGCTGACATTGAAACAAAACAAAAGCAACCTACATTACGATCTTTATCACCTTTTGAGAAGCAGCTATCTGCAATTTTTACTGATGCCGTATTTAGAAAATTTCAGTTGGAAATATTGGGAATGATGTCCTGTCATCTCCAGATGGAAACAGAAGGAAGGGAAAATCTGACATTTCTTGTTCATGATTTTGAGAAGCGGAAGAAATTTATTGTTTCTTGGAAGGAAGCAGATTTCATTCCATCCTATTATATTTTAAAACGATGGACAAAAGATTCAATGGCCGATCAATTTTCTGGTGACATAATTACCAGGACTGCTAATCGAGTTCAACGATTTAATGACCTTTGCAGGCGGGCAATTGTATTAAGTGAAATTGGATCTTTATCTGAAGATACTTACCGTGTTGCATCTCAGGCCATGGAAGAACTGTATAAACACTGTGTGAACACAAAATATTCTGCCAGAAACACTTCGGATCCCAACAAGTTGGCTCTTGATGCTTTTGATGTTGGAGATAAAAATTATGGCTGCAACAGGGCAAAACCTACTAACAAAAGGAAGTCATTCAGTAAAAGGGAATGCTCTGATCCAGAAAGAATCAATATCAAGACGATGGATGATCTCAGAAAGAGGGACTTGGATTCTAGAGCTTCGACCCTTGATGCCTATTATGGGACTCAGCAGAGTGTGCTTGAAGATGGGCAATTGCATTCCATTGCAAGCCGTGGTCCACATTATGGGATGCAGCACAGGATGCAAAGACCGCTTCAAGGAGAGCTCACTTTCAGAACGCCAACAGTACAAGGGTGTTTTGACCTCCAAGATAGTCTAGAAGCTATAGAAGAACCTGTTAAGCCCTCATGGTTCCATGACATTGCATCAAAGCAACTAGAAGCTGATAAATCACTTTCCTGA 2205 0.3887 MEIDLEVPICEHEKLNIGSNGNNVTDTTSDICVEEHKINPSSMTAHCKEVLSEKAFCCQDPVDLNSNQGDAIDKFPIKEPENGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESGTAVNSRPCTKTDCKAGMHMKKKLDGNWIIYNFVKEHNHEICPDDFVTGRSKQISNLACRKKGMQLALEEGDVQLIIEYFISMQCENPNFFYAIDLDQDRHLRTVFWVDSKGRFDYKKFHDIVLIDTFYLKNKYRIPFVPFVGVNHHFQYILLGCALVGEESVSAFTWLMQAWLKAMSNLPPEVIITDHEPFLKEAVMEVFPDKNETFEERWWKLMNRIELKDDELVQSLYEDRKKWAPTFMRDISLVGLSTIERSESVSSFFDKYIRVDSTFKEFIEQYKVFSGDCFDIEAKADIETKQKQPTLRSLSPFEKQLSAIFTDAVFRKFQLEILGMMSCHLQMETEGRENLTFLVHDFEKRKKFIVSWKEADFIPSYYILKRWTKDSMADQFSGDIITRTANRVQRFNDLCRRAIVLSEIGSLSEDTYRVASQAMEELYKHCVNTKYSARNTSDPNKLALDAFDVGDKNYGCNRAKPTNKRKSFSKRECSDPERINIKTMDDLRKRDLDSRASTLDAYYGTQQSVLEDGQLHSIASRGPHYGMQHRMQRPLQGELTFRTPTVQGCFDLQDSLEAIEEPVKPSWFHDIASKQLEADKSLS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03748 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 70 578 IPR031052 GO:0006355
Vimu10g03748 734 Pfam MULE transposase domain 259 341 IPR018289 -
Vimu10g03748 734 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03748 Vimu-Chr10 46258059 46261582 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu10g03748 MULE 6.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03748 - - gmx:100802811 1066.6