Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03747 ATGGTGATTGGGAGAGTTGCTGTTCCAAATCCTCCCTCAGGTCTGTTCCACAGTCCTTCTTCTGCTGCCACCCTCATACCTCCACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCTTCCTCCTCCGCCTCCTCCGCTAATCGCACTCGTCACACGTCCACTACAAAAAACGGTTCTCCCTTCTCAACCTTCGGAAGAGTCAAGACTCAGAAACCGAAAACTCTGCTCCACAGAAGCAGGGACCGAAGACGCGCCCTTCAAGTTGAAGAAGAAGAAGAAGAAGACGATAATGATGATTATGATGATAATGACGACTACTATGACAATCTCGCAGCCCCGAGAGGAAGACCTTCTCATTCTGCGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAATCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGTACCTGTTCATTCATTCACTCCTACTATAATTCACTCATTCTCACATCCTATCTCCTGTCGTTGTTGCTTTAGGCTTTATGCTATTACTGACAAGTTCGTTGCAGCCATGGCATTTGCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCGCAAGCTCCTAGAGTGCTGGTACTCGCGCCCACTGCGGAGTTAGCTTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAGGACTCAACTGGAAAATTTACAGCAAGGAGTTGATGTCTTAATAGCAACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCATGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAGTGGCTCTTCAATGCCTGATCACTTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGACTGCGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGACACAGCATTTTTGAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACACTTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAATTCATTAAGGCGTTTTGATAGAAAAGGAAATCACATGCAAGTTCTACCGTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACTCGTCCTCCATCAAAAGGAGTCTCCCAGTTCATGATTTGCACTGACAGGGCTTCACGAGGAATTGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGCCGTGTTGGAAGAACAGCCAGAGGTGCGAAGGGAGTAGGAAAGGCGTTTATATTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCACTACATGATGTTTGTCTGAACTTCACTGCTGAATCATGGAAAGGAGAGCTATGCAGCTGCTTACCTCTTTTCTCATCAGAACCACCTTATTCAATGCAACTTGGCTGA 1857 0.455 MVIGRVAVPNPPSGLFHSPSSAATLIPPHTRLLSFSASAAASSSSSSASSANRTRHTSTTKNGSPFSTFGRVKTQKPKTLLHRSRDRRRALQVEEEEEEDDNDDYDDNDDYYDNLAAPRGRPSHSASRSGGRKRGGWDIIPRFPSQAKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQVPVHSFTPTIIHSFSHPISCRCCFRLYAITDKFVAAMAFAPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGAPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLYLMNEGFLHAVLDEVDILFGDEDFEVALQCLITSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTLVFCNKIETCRKVENSLRRFDRKGNHMQVLPFHAAMTQESRLASMEEFTRPPSKGVSQFMICTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVCLNFTAESWKGELCSCLPLFSSEPPYSMQLG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03747 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 225 400 IPR014001 -
Vimu10g03747 618 CDD DEADc 222 386 - -
Vimu10g03747 618 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 62 588 - -
Vimu10g03747 618 Pfam DEAD/DEAH box helicase 222 386 IPR011545 GO:0003676|GO:0005524
Vimu10g03747 618 Gene3D - 141 399 IPR027417 -
Vimu10g03747 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 595 IPR001650 -
Vimu10g03747 618 CDD SF2_C_DEAD 412 563 - -
Vimu10g03747 618 MobiDBLite consensus disorder prediction 41 143 - -
Vimu10g03747 618 MobiDBLite consensus disorder prediction 41 74 - -
Vimu10g03747 618 SMART ultradead3 213 415 IPR014001 -
Vimu10g03747 618 MobiDBLite consensus disorder prediction 95 111 - -
Vimu10g03747 618 Pfam Helicase conserved C-terminal domain 436 552 IPR001650 -
Vimu10g03747 618 SMART helicmild6 463 553 IPR001650 -
Vimu10g03747 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 564 IPR027417 -
Vimu10g03747 618 Coils Coil 81 108 - -
Vimu10g03747 618 Gene3D - 433 586 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03747 Vimu-Chr10 46251531 46255603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03747 224 561 Eukaryotic Initiation Factors Gene Family AT3G19760 28.080 2.71e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03747 K13179 - gmx:100784377 747.658