Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03743 ATGGGTGATGAGAGTGTTGCTGCTTCGGCTCATTTTGGTTTGATATCTGAAGAGGACCATCTGTGGTTCAGTTTCCTTGAACTAGAAGCCACTTATACTCATAGTGTTCTGGAGGATCCTTCTATATCACAGTGTGTGGAGACAGAGCCTCAAATCCAGAATCAAAACCAAGTGGTCGCAGCAGAATTGGGATGCGAATGTGAATACAGTAGTGAAGCGCACCGAGCAGCCTCGTTGAATAGGTTCCGTCAAAAGAGAAAACGACGTTGTTTTGCTAATAAAATAAGATACAAGACACGCCAAGAAGCTACTCTCAGGGTACATCGTAGTAAGAGCCAGTTTATTTTATCCAAAATCCATGAGTCAGACCAAGATGCCATTCACTCCGAGATATTCTCAAAATGCACCCCTATGATGCGGCGAGGGCCATCTGGGCCAGCCTCACTTTGCAACGCTTGTGGCCTGTCTTGGGCAAACAGGGGTGTCTTCAATTATAAGAAAGCAATCTAA 510 0.451 MGDESVAASAHFGLISEEDHLWFSFLELEATYTHSVLEDPSISQCVETEPQIQNQNQVVAAELGCECEYSSEAHRAASLNRFRQKRKRRCFANKIRYKTRQEATLRVHRSKSQFILSKIHESDQDAIHSEIFSKCTPMMRRGPSGPASLCNACGLSWANRGVFNYKKAI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03743 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 163 - -
Vimu10g03743 169 CDD ZnF_GATA 136 162 IPR000679 GO:0006355|GO:0043565
Vimu10g03743 169 SMART GATA_3 128 167 IPR000679 GO:0006355|GO:0043565
Vimu10g03743 169 Pfam CCT motif 75 115 IPR010402 GO:0005515
Vimu10g03743 169 Gene3D - 132 163 IPR013088 GO:0006355|GO:0008270
Vimu10g03743 169 ProSiteProfiles CCT domain profile. 75 117 IPR010402 GO:0005515
Vimu10g03743 169 PANTHER GATA TRANSCRIPTION FACTOR 28 40 163 IPR045280 GO:0006355
Vimu10g03743 169 Pfam GATA zinc finger 136 162 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03743 Vimu-Chr10 46238897 46240293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03743 23 163 Tify Gene Family AT4G24470 43.827 6.99e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g03743 CCT 2.1e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03743 - - vra:106760511 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03743 10 46238897 46240293 Vimu10g03743 10 46238897 46240293 ECH