Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03723 ATGGGAAGGTCTCCCTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTCATAGCTTACATCAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGTCTTCGCTGGATCAACTACCTCCGCCCTGACCTCAAACGCGGGAATTTCACGGAAGAAGAAGACGAGCTCATCATCAAACTCCACAGCCTCCTCGGGAACAAGTGGTCTCTCATAGCCGGAAGATTGCCGGGGAGAACGGACAATGAGATAAAGAATTACTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGACTCTCCTCGTCACAATCAAGTCCAAGAATCAGCCGGCGCAGCCACCATAACTTTTGCTCCCAAACAAGAGGAAAACGACAACAACGTCTTGGTGGAGGTTAAGGATTCGAAAAGTCCCACATCGGAACGCTGCCCTGACTTGAACCTCGAGCTAAGCATCAGTCCTCCCCATCACGAGCGGGAAGAGGGTGGCGATGAACAGGAATCGAAGAGTATTGGGAGAAGCCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGACTGTAGCTGTGCCCTCAATGCCATCACTGCTAATGCCAACGCTTCCACTGCCACTGGCTTCGATTTCTTGGGCTTGAAAACCAACCCTTTGGATTACAGAACCTTGCAAATGAAATGA 777 0.5148 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSPRHNQVQESAGAATITFAPKQEENDNNVLVEVKDSKSPTSERCPDLNLELSISPPHHEREEGGDEQESKSIGRSLCFACSLGLQNSKDCSCALNAITANANASTATGFDFLGLKTNPLDYRTLQMK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03723 258 CDD SANT 69 112 IPR001005 -
Vimu10g03723 258 SMART sant 66 114 IPR001005 -
Vimu10g03723 258 SMART sant 13 63 IPR001005 -
Vimu10g03723 258 MobiDBLite consensus disorder prediction 164 199 - -
Vimu10g03723 258 FunFam Myb transcription factor 68 137 - -
Vimu10g03723 258 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vimu10g03723 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
Vimu10g03723 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu10g03723 258 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu10g03723 258 CDD SANT 16 61 IPR001005 -
Vimu10g03723 258 MobiDBLite consensus disorder prediction 184 199 - -
Vimu10g03723 258 Gene3D - 69 142 - -
Vimu10g03723 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu10g03723 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu10g03723 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu10g03723 258 Gene3D - 14 66 - -
Vimu10g03723 258 FunFam MYB-related transcription factor 13 66 - -
Vimu10g03723 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03723 Vimu-Chr10 46124606 46125477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03723 1 258 MYB Transcription Factor Family AT4G38620 58.681 2.13e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g03723 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03723 K09422 - qsu:112037069 380.178