Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03720 ATGCAACAATTTATTACGGGAATTGAAGCAATGCGAAAGGCGATCTCCTTTCTCGTTCAACCGCGATGCCTCCTTCTCGTCATTGTTCTTACAATTTTCTTGATTCTCGCAATATCTGGTTCTAGACGGGTTGAAGAAAAAGTAGAAGAAGAACCTGAAATTACTGACAGAGTATTCTTGGATGTTGATATTGATGGACAACGTCTAGGTAGGATTGTCATCGGATTATATGGCCAGGTTGTACCAAAAACTGTCGAAAATTTTAGAGCTTTGTGCACAGGGGAAAAAGGAAAGAATGCCAATGGTGTAAAACTTCACTACAAAGGAACACCATTTCATAGGATAGTATCAGGTTTCATGTTTCAGGGTGGTGACATTGTCTACCGTGATGGTAGAGGATATGAATCTATTTATGGTGGTACCTTTCCTGATGAAAATTTCAAGATAAAACATTCACATGCGGGTGTAGTCTCTATGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTCATTACCTCAGTGAAGACCGGTTGGTTAGATGGAGAACATGTTGTGTTTGGGAAGGTTGTCCAAGGCATGGATAATGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCCAGAAAGAAAGTAGTAATTGCAGATTCTGGTCTCTGGAAAGATACCCAAGAGTCTGTCAGATGA 699 0.4092 MQQFITGIEAMRKAISFLVQPRCLLLVIVLTIFLILAISGSRRVEEKVEEEPEITDRVFLDVDIDGQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGVKLHYKGTPFHRIVSGFMFQGGDIVYRDGRGYESIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITSVKTGWLDGEHVVFGKVVQGMDNVFAIEGGAGTYNGKPRKKVVIADSGLWKDTQESVR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03720 232 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
Vimu10g03720 232 Gene3D - 44 231 IPR029000 -
Vimu10g03720 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 222 - -
Vimu10g03720 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 223 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 FunFam Peptidyl-prolyl cis-trans isomerase 44 229 - -
Vimu10g03720 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vimu10g03720 232 SUPERFAMILY Cyclophilin-like 54 227 IPR029000 -
Vimu10g03720 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 220 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03720 Vimu-Chr10 46102054 46106206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03720 70 224 U-box Gene Family AT5G67530 39.744 1.38e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03720 - - vra:106760817 419.083