Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03711 ATGAGCGAGAGTGAGAAGCAAAGGGTAACGGGAAAGGTCAAGTGGTTCAATGATCAGAAGGGATTTGGCTTCATAACCACAGATGACGGCGGCGAGGATCTCTTCGTTCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTAGCCCTAGGAGAGTCCGTCGAGTTCCTCATCGACTCCGATTCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCCGTGCAGGGCACCCGCGGTGGTGGAGGAGGGGGAAGAGGTGGATACGGAGGCGGGGGTGGTGGAAGAGGTGGATATGGCGGCGGAGGACGCGGAGGACGAGGTGGATATGGAGGCGGTGGCGGATATGGTGGAGGTGGCTATGGCGGAGGCGGTGGGTATGGTGGAGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGGGAGACAGGTCACATGGCGAGGGACTGCAGCCAAGGTGGTGGCGGCGGTGGAAGGTACGGCGGAGGTGGTGGCGGAGGTGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCCCTTCGAATGGCCGTTGA 585 0.6188 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVQGTRGGGGGGRGGYGGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGCYKCGETGHMARDCSQGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPSNGR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03711 194 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Vimu10g03711 194 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Vimu10g03711 194 ProSiteProfiles Zinc finger CCHC-type profile. 176 191 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 Pfam Zinc knuckle 175 191 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 SUPERFAMILY Retrovirus zinc finger-like domains 131 192 IPR036875 GO:0003676|GO:0008270
Vimu10g03711 194 Gene3D - 1 85 IPR012340 -
Vimu10g03711 194 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Vimu10g03711 194 MobiDBLite consensus disorder prediction 65 98 - -
Vimu10g03711 194 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Vimu10g03711 194 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Vimu10g03711 194 PANTHER COLD SHOCK DOMAIN PROTEIN 2 109 191 - -
Vimu10g03711 194 Gene3D - 137 163 - -
Vimu10g03711 194 Gene3D - 171 194 - -
Vimu10g03711 194 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Vimu10g03711 194 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Vimu10g03711 194 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Vimu10g03711 194 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Vimu10g03711 194 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03711 Vimu-Chr10 46054714 46056419 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vimu10g03711 CSD 1.9e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03711 - - gmx:100820359 212.231