Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03706 ATGGATGATCTTGGACAGTGCCTGTTGGAATTCTTTGTTCGGAGCCCCCTCCTAGACACTCGAATCGTCTCCATGTCCGATCCCGATTCCCGTTTCAAGAGAACTTTTCTTCTCAAGATTCTTCAAAACCACCTATCTTCTGATTCCATCAACATTACTGAAAACTTTCTCAAAATCCTCGAGCATCTTGAGGAACTCTTTCGCTCCGATGGCTTTCCGGTTACTGCCACCATGAGTGCCGCTTACTGTGCCGTGGCGGTGGAGTGCACAATCAAGTATCTGCGTTTGAATCTTTACAGCCATAATCCTCTCTACATTCGTGCCGTGAACAGGATATGGCGAATTAGGATTCCGCGTATGAATAGTTCCGGTTCCAGAGAAGGGAGCCTTCTGTTCTCCGCGGAGTTGGAGCGGTGGAGAAGGGACATTGAAACTTCCCTTTTGGATTCACAAGTGAGGGAGCGATTGGCCTCTGTAGAAACTAGAAGGGATGCCATTATCAAGCTCAGGGCGTGTTTGGAAGAAGCCCTTACCGTTTTGGGCACTCCTCTTGTTCCGGTAACAGCTACCGAGCACACGAATGAGGCCCAACGAAACCAAGAAGGAGGTCACACCGAGCACACAAATAAAGCTCAACTAAACGAAGAAGGAGATCACACCGAGCACACGAATAAGGTCCAACAAAATGAAGAAGGAGAAGTTCAAAAGTGTAACAGTGCCGCGGAGAATTTGTATTTACCTACCACTATTGAAGTTGAAAAGATTGGAGATTGCATTTCTGGGGTTGAAAAGATTGGGGATTGCATTTCTGAGGAGCGGTTGGCTCAGGATTCTTTACCAAAAATTGTTGAAGTTGAAAAGGTTCGGGATTGCATTTCTGGGGACTTGCAAGCATTGGCTAAGGATTCTTTAACAACAACTATGGAAGATAATGAGGAGGTACAGAAGACTATAGAGGCAGATTTATCTTGCCCACAAGATATAAACGATAATAAAACTGATCCAGTGGAAAATGTTGCACGTGTTGATGAGCGAGATTCAATAGATAATCTGCAGGGTGGAACATCAAGATTTAATTTGCCAAGTCCCAAGAGGAGAAAACTTTCTCCGTTGAAAATCTATAAACCAACCGCCATTACAAAAAGGAGAAAAGTAAAAAGGTGGAGTCAATTAGAAGAGGAGACACTTAAGAATGGCGTAGAGACGTTTGGCAGGGGAAACTGGAAGCTAATCCTAAATGCTCACAAAGATATATTTGAAGAGAGAACCGAAGTTGATTTGAAAGACAAATGGAGAAATATGACGCGGCATGGCTGCAAATGA 1323 0.4414 MDDLGQCLLEFFVRSPLLDTRIVSMSDPDSRFKRTFLLKILQNHLSSDSINITENFLKILEHLEELFRSDGFPVTATMSAAYCAVAVECTIKYLRLNLYSHNPLYIRAVNRIWRIRIPRMNSSGSREGSLLFSAELERWRRDIETSLLDSQVRERLASVETRRDAIIKLRACLEEALTVLGTPLVPVTATEHTNEAQRNQEGGHTEHTNKAQLNEEGDHTEHTNKVQQNEEGEVQKCNSAAENLYLPTTIEVEKIGDCISGVEKIGDCISEERLAQDSLPKIVEVEKVRDCISGDLQALAKDSLTTTMEDNEEVQKTIEADLSCPQDINDNKTDPVENVARVDERDSIDNLQGGTSRFNLPSPKRRKLSPLKIYKPTAITKRRKVKRWSQLEEETLKNGVETFGRGNWKLILNAHKDIFEERTEVDLKDKWRNMTRHGCK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03706 440 MobiDBLite consensus disorder prediction 214 229 - -
Vimu10g03706 440 ProSiteProfiles Myb-like domain profile. 380 435 IPR001005 -
Vimu10g03706 440 Gene3D - 388 440 - -
Vimu10g03706 440 MobiDBLite consensus disorder prediction 214 233 - -
Vimu10g03706 440 Pfam Myb-like DNA-binding domain 386 434 IPR001005 -
Vimu10g03706 440 PANTHER MYB TRANSCRIPTION FACTOR 5 437 - -
Vimu10g03706 440 SMART sant 384 437 IPR001005 -
Vimu10g03706 440 SUPERFAMILY Homeodomain-like 387 438 IPR009057 -
Vimu10g03706 440 CDD SANT_TRF 386 436 - -
Vimu10g03706 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 380 439 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03706 Vimu-Chr10 46026802 46029041 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03706 1 434 Single Myb Histone (SMH) Gene Family AT1G15720 23.937 2.72e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g03706 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03706 - K11111 var:108331610 511.916