Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03696 ATGGTGCTCCTTGTTCCTACGCTGAAGTGGATAATCTTTTTCGCTCTCTTCATTTTTTCAGGCAATGCACTTCTCCTTTATCTGCTGCTTCTCTTCTATTGCTTCGATCCCTTGGATCCAACTGGGAACATTTCCGTAACTTTTGACATTTACCAACGTACAGATAATGGATATCTGGCAAGGGTGACGCTTCAGAACTATCATCAGTATCGGCATGTGGAGAAACCAGGGTGGAAGCTAGGATGGAAATGGGCTAAGAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGACAGAGGGAATTGCTCGTCTTACAGTGGCTCTCAGATGCCACATTCCTGCAAGAATGATCCCATCATAGTTGATCTCTCTCCGGAGGTCTCAGAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTGCCTGGTCTATTGATCCTTTCAATGCATTCTCTTCATTTGAACTTGAAGTGCGCAACGTGGGAGATAACCCACTTGGACAAGCACCTAACAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCCCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCGTACTCCAGTTTCTTAGCAAACACATTACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCCATCGTCACATCTTGCCGAGATTGCAGTTGCGGATGCAGAGAAGCAGATAAAAGTACTGCGTCTTGCATAAGGCCTGATTCCTTGTCACGGTCCAATGAGGACAACACGATTGAAATTGTCGAATGCACCGACCACATGTGCCCCGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAACCAATGGAGAGTGAAGCTTACAATTTCTAACTACAATTACAACAAAAACTACTCCAACTGGAACTTGCTGGTCCAACATCCTGGTTTCACTCAAAAAACATCAGCCTACAGTTTCAACAGCACTAAACTTCCCACTCTCGGCATCCAAGACGGAGTTTCTCTGTTTTGGGGAATAGATTATTACAACAATGAGCTGTTGCATTCTGATAAGGCTAAAGTGGGTGTTGTGACAACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAATAAGTAATGGATGGGCATTTCCTAGAAGAATATATTTCAATGGTGACAACTGCGAAATGCCTTTACCTGACAGGTTTCCCATGCTGCCAAATCGTAGCTCTACTCTAGCACCTACTTCTTGTGGTTTTATTCTCTTATTTATCCTTTTGTTTCTTCCCCTATTACTCCTTTAG 1347 0.438 MVLLVPTLKWIIFFALFIFSGNALLLYLLLLFYCFDPLDPTGNISVTFDIYQRTDNGYLARVTLQNYHQYRHVEKPGWKLGWKWAKNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKNDPIIVDLSPEVSENRSEHCCRGGLLSAWSIDPFNAFSSFELEVRNVGDNPLGQAPNNLTLMAPGPGYTCSPLLDTDPSVSSDFGGLRQVPVLRTWKSTCAYSSFLANTLPVCCVSLSSFYNPIVTSCRDCSCGCREADKSTASCIRPDSLSRSNEDNTIEIVECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYNYNKNYSNWNLLVQHPGFTQKTSAYSFNSTKLPTLGIQDGVSLFWGIDYYNNELLHSDKAKVGVVTTEILLDKDPNSFTISNGWAFPRRIYFNGDNCEMPLPDRFPMLPNRSSTLAPTSCGFILLFILLFLPLLLL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03696 448 PIRSF COBRA 8 448 IPR006918 GO:0010215|GO:0016020
Vimu10g03696 448 PANTHER PROTEIN COBRA 26 428 IPR006918 GO:0010215|GO:0016020
Vimu10g03696 448 Pfam COBRA-like protein 58 220 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03696 Vimu-Chr10 45979900 45982168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03696 28 448 COBRA Gene Family AT3G29810 47.836 5.57e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03696 - - vra:106760500 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03696 10 45979900 45982168 Vimu10g03696 10 45979900 45982168 ECH