Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03693 ATGAAGAAAAGCAATCTCCGAAGCGCCAAGGTCCAATCACCAAACCACGTTCAATTCAGTTCCAAGACGCCGGAGAAAATGTCGCAACAGAACCGCAACCGCGGCGTCGCGCTCTCTGTTACAGACATAAAAAAAGTTGGCAAGGGTTTGCAGGATCGGAAGGGACGCGCTGAAACGACGTCGGCACGGCCGCAAAGCAAGAATGTGAGGAGGCAGATCTTGCAGCGGTCTTCTTCTCCGAGTAAATCCAAGAGTACTGACGATGATCCCTCCAAGCTTCCCGAAAAATATGAAATTTTGGATCAGTGCTTCGATCGCTTGGACACTTTAATTTCAATGTTCCGTCTGAAAGGGAAGACGCCATCTTTTACGGAAATCAGTTCTAGAATTGAATCTTTAACAGACAGGAGGTTTACTCACCGCCATCTAGCGCAGTTGAAATTTATCTTGCCTGATGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCAGTTGTATGAAGCCGGATATTCACATTTCTTTAGCCCCTGTGGCGGTAGAGTCTGATGTGAATGGTCAACGTGGGATAGTTTCGTTGAAGAAGTTGTTTCACGCACGGCTTAGAGAATTTTGGGACTCTCATCCTGAGGGTGACGAAATTCCAGAAGGAGCTTTGCCAGAGCCATTCAATGGCCCAAAGAAAGTCAATATTTTAGACACGTTGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATAGTCAATAATGTAGAGTCTGCTAGCATAGATGAAAAGATGTCTACACCTGTAGAGACATCATTTGAATTGCCTAATGAGCATCTGGCAGCAGCTTCTCACATTGCTCCATCCTTTAGAGCAAGATTTTCTTTGAAATTTAAACAAAATTTAGCAGATACTGTACAGAAAATTTCTCAAGTAGATTCGGTACAACCCTCCCCAGCTAAGTCGGCTTCACAAGCAGCTAGCAGTGAAAATTGTTCAACAATATGTTCCTCTCTGGAATCATCCAGTGCTCCCGCTCCCACTGCCACTCCAAGGAAAACCGTCGACTACACAGAAAACGCAGATGCTTCTCCCAAGAGGATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGATATCTTATGAGCCCAGATGACCACCCAACCAGTTCTTTGAACAAGTTAGCTAGGCGGCCACCTCGCTCAAGATCATTGATATTTGACACCCCAGTGAAGAATGATGAGGTTGTGAATGAAGACAATGCCGGTGGATTACCAATAGATGATGATATTTTTGAGATCCTCCCAGGAAAACTTATCCAATCGATTAGAGAAAAGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCACTCAAGCAAAGAAACGGAAAAAAATTATAGCTAACCTCCCTAAGCTCTTTGACATGATTCGTCTCTTGCTTCGACAGCGGAATTGTATTACTAAAATGGAGCTTGTAAGCAAGATAATATCAAGCCACAGTGATATTGTTGACATCAGTGAAGTTGAAGAGCAGCTAGATTTGTTGCAAGAACTAGCACCGGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTGCTCTTATTCATAAACAAAATGTTGAACCCTGAAACCATTCGAGCATCTCTTGAAGAAGCGGCATAG 1728 0.4387 MKKSNLRSAKVQSPNHVQFSSKTPEKMSQQNRNRGVALSVTDIKKVGKGLQDRKGRAETTSARPQSKNVRRQILQRSSSPSKSKSTDDDPSKLPEKYEILDQCFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHRHLAQLKFILPDAIVLKKFLVHDERTSCMKPDIHISLAPVAVESDVNGQRGIVSLKKLFHARLREFWDSHPEGDEIPEGALPEPFNGPKKVNILDTLETRLPTKLSLCMRYNDIVNNVESASIDEKMSTPVETSFELPNEHLAAASHIAPSFRARFSLKFKQNLADTVQKISQVDSVQPSPAKSASQAASSENCSTICSSLESSSAPAPTATPRKTVDYTENADASPKRIDAMSTPAKLVSTPIRLMSATPALRSPKRYLMSPDDHPTSSLNKLARRPPRSRSLIFDTPVKNDEVVNEDNAGGLPIDDDIFEILPGKLIQSIREKERMAMEERDPAITQAKKRKKIIANLPKLFDMIRLLLRQRNCITKMELVSKIISSHSDIVDISEVEEQLDLLQELAPEWISEKQVSSGDLLLFINKMLNPETIRASLEEAA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03693 575 MobiDBLite consensus disorder prediction 7 37 - -
Vimu10g03693 575 MobiDBLite consensus disorder prediction 339 365 - -
Vimu10g03693 575 MobiDBLite consensus disorder prediction 1 93 - -
Vimu10g03693 575 FunFam CDT1-like protein a chloroplastic 447 575 - -
Vimu10g03693 575 Pfam DNA replication factor CDT1 like 93 182 IPR014939 -
Vimu10g03693 575 Gene3D - 448 575 IPR038090 -
Vimu10g03693 575 MobiDBLite consensus disorder prediction 46 60 - -
Vimu10g03693 575 CDD Cdt1_c 448 572 IPR032054 -
Vimu10g03693 575 PANTHER DNA REPLICATION FACTOR CDT1 9 574 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vimu10g03693 575 MobiDBLite consensus disorder prediction 397 418 - -
Vimu10g03693 575 MobiDBLite consensus disorder prediction 339 359 - -
Vimu10g03693 575 CDD Cdt1_m 92 226 IPR014939 -
Vimu10g03693 575 SUPERFAMILY "Winged helix" DNA-binding domain 88 225 IPR036390 -
Vimu10g03693 575 MobiDBLite consensus disorder prediction 61 81 - -
Vimu10g03693 575 SMART CDT1_2 93 223 IPR014939 -
Vimu10g03693 575 Pfam DNA replication factor Cdt1 C-terminal domain 458 549 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03693 Vimu-Chr10 45962824 45965910 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03693 9 573 Core DNA Replication Machinery Family AT2G31270 38.803 9.15e-90 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03693 K10727 - gmx:100778818 697.967