Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03686 ATGTTTCACCCAGCAGTGGTTGCATCATGTCCCTGTCCGCATCCTTATCCTTGGCGCCATCACTTCCCCGGCGCAGGCGCAGGTACAGTGACGGTGAGGGTGACCCCAATGCGAGTTGTGACAGGGAAGGCGGTGGTTGGTTCCAGAATAAGGTGCATGGCCAATCCCAGAAGAGTCCAAATGGTGGCCAAGCAAATAAGGAGAGAGCTCTCTGATATGCTCCTCACCGACAAAGTGTTGCAGTATGCTATTCTTCCCGAAACTTCCTTAGGAGCCGACCGTTACCTATCTTCCCTCACCACCGTCACCGATGTCCAAGTCTCCGGTGATCTCCAGGTGGTTAAGGATTTTGTCTCTGTTTTTGGGGATGAAAGAGGGAGAGAAGTAGCCATTGCCGGCTTGAAGTCAAAGGCCAAATATGTTCGCAGTGAATTGGGGAAGCGTATGAAGTTGCGCTTAACTCCTGAGATACGCTTTATTGAGGATGATTCCTTTGAGAAAGGAAGCAGGGTGATTGCAATATTAGATAAAATAAAGAATGAGAAGAGTTCAGGGAGTCAAAACAAGGAGCGGTTGGATTCATCAACAAATGAGGATGATGATGGTTGGGATGAGGAAAGAGATTTCATTTGCGGAGGCAGGCAAATGAGAAATGTCTTATTTTCGTTGGGAATGGAAACGTCGTCGTCTGGAGCGGCACACCGAACCGGAGGGGGGCGGAGGAATTCCTTCTTGACGGGGGCTATGGCCCTGGAGACGAGCTGCTCTGGGACGTGGAAATCCCACGTTTTCATCACGGCAACAGAATCATGCGACCCTCAGAGATCAGTCTCCCCCGAGAATTTGAATTTCTCATATCTATTCGACGTCGTTGCAGAACTATCAACGATCATGGCTGGTTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTCGGAGCCGCAGCTGCCCTCGTGTTCTCCTGTAATCCACTCTCTTCATTTTCCCATTCACTTCGATTAGATCCGTGTTTACGTGCAGTGATAGCAATGTTTCACCCAGCAGTGGTTGCATCATGTCTCTGTCCGAATCCTTATCCTTGGCGCCATCACTTCCCCGGCGCAAGCGCAGGTACAGTGACGGTGAGGGTGACCCCAATGCAAGTTGTGACAGGGAAGGCGGTGGTTGGTTCCAGAATAAGGTGCATGGCCAATCCTAGAAGAGTCCAAATGGTGGCCAAGCAAATAAGGAGAGAGCTCTCTGATATGCTCCTCACCGACAAAGTGTTGCAGTATGCTATTCTTCCCGAAACTTCCTTAGGAGCCGACCGTTACCTATCTTCCCTCACCACCGTCACCGATGTCCAAGTCTCCGGTGATCTCCAGGTGGTTAAGGTTTTTGTCTCTGTTTTTGGGGATGAAAGAGGGAGAGAAGTAGCCATTGCCGGCTTGAAGTCAAAGGCCAAATATGTTCGCAGTGAATTGGGGAAGCGTATGAAGTTGCGCTTAACTCCTGAGATACGCTTTATTGAGGATGATTCCTTTGAGAAAGGAAGCAGGGTATGCGTGCTTACTTGTGTGTTTGTTACTGTACAGTTGCAAGATACTTTAGTTTTCCTTGTCCACGTTTTTCTTAGTTCCGTTAAGGTGATTGCAATATTAGATAAAATAAAGAATGAGAAGAGTTCTGGGAGTCAAAACAAGGAGCGGTTAAATTCATCAACAAATGAGGATGATGATGATTGGGATGGGGAAGATCCTGAAGAAGGTGTCATTTATGTGGAATAG 1770 0.4836 MFHPAVVASCPCPHPYPWRHHFPGAGAGTVTVRVTPMRVVTGKAVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAILPETSLGADRYLSSLTTVTDVQVSGDLQVVKDFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKNEKSSGSQNKERLDSSTNEDDDGWDEERDFICGGRQMRNVLFSLGMETSSSGAAHRTGGGRRNSFLTGAMALETSCSGTWKSHVFITATESCDPQRSVSPENLNFSYLFDVVAELSTIMAGFSGDETAPFFGFLGAAAALVFSCNPLSSFSHSLRLDPCLRAVIAMFHPAVVASCLCPNPYPWRHHFPGASAGTVTVRVTPMQVVTGKAVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAILPETSLGADRYLSSLTTVTDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVCVLTCVFVTVQLQDTLVFLVHVFLSSVKVIAILDKIKNEKSSGSQNKERLNSSTNEDDDDWDGEDPEEGVIYVE 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03686 589 Pfam Ribosome-binding factor A 402 515 IPR000238 GO:0006364
Vimu10g03686 589 Pfam Ribosome-binding factor A 58 174 IPR000238 GO:0006364
Vimu10g03686 589 Gene3D - 397 513 IPR015946 -
Vimu10g03686 589 Gene3D - 53 169 IPR015946 -
Vimu10g03686 589 MobiDBLite consensus disorder prediction 183 205 - -
Vimu10g03686 589 MobiDBLite consensus disorder prediction 554 589 - -
Vimu10g03686 589 ProSitePatterns Ribosome-binding factor A signature. 141 162 IPR020053 GO:0006364
Vimu10g03686 589 NCBIfam 30S ribosome-binding factor RbfA 397 516 IPR000238 GO:0006364
Vimu10g03686 589 NCBIfam 30S ribosome-binding factor RbfA 53 180 IPR000238 GO:0006364
Vimu10g03686 589 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 542 589 IPR000238 GO:0006364
Vimu10g03686 589 MobiDBLite consensus disorder prediction 572 589 - -
Vimu10g03686 589 Hamap Ribosome-binding factor A [rbfA]. 57 175 IPR000238 GO:0006364
Vimu10g03686 589 SUPERFAMILY Ribosome-binding factor A, RbfA 397 513 IPR023799 -
Vimu10g03686 589 SUPERFAMILY Ribosome-binding factor A, RbfA 53 178 IPR023799 -
Vimu10g03686 589 FunFam probable ribosome-binding factor A, chloroplastic 397 513 - -
Vimu10g03686 589 Hamap Ribosome-binding factor A [rbfA]. 401 519 IPR000238 GO:0006364
Vimu10g03686 589 ProSitePatterns Ribosome-binding factor A signature. 485 506 IPR020053 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03686 Vimu-Chr10 45909349 45915311 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03686 298 323 Primary Pumps ATPases(2) AT2G16510 92.308 1.29e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03686 K02834 - gmx:100812407 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03686 10 45909349 45915311 Vimu10g03686 10 45909349 45915311 ECH