LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03684	ATGGACGAGGAAGAACGTGACGAAGGAAGTTCTGGCCCGGGGGTTGTCGCCGGCGGCCAAACCCCAGAGCAGCTCGTCTCCAGGGCCATAGCCCCCGTCAAGAAGGAATTCCTCCGCCCCCCTCCGGTTCGGTCTGCCGCTCCAGACGACGACGTTTCCATTCCCAACGAAAATAAGACCTCTGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGGACAAAAGTCGGCACGAAACCTATGTCCAGAAATTGCGAGGACGGGGGATGTTAGTTCGTGTCCGTATAAAGACAAATGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGAAGGACAATGCCCATTCGTTAAATCTGGAGTTTCTTGCCCTTATGGCTTAGCGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCAGGCGTTCGAAACGGTGTGCCTTCTGGCGTTCGAAATGGTCCGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGAGGTTCAAAAGCTTTTGTGGAAAAATAAGATGACCTTCTCGAAGGCAGATGCCAAACTCAAAAGTGTCGGCCTCTTGGGATCGTCTAAGTCAATAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTGTGATCATTCTGATGACAGTGGCTCTTGTGTTGTAACGTCCGACTCAGGTTCTAAGTTGGACTGCCCTGCCGAAGTTATGAAAGATGATGACAATGACATAGATGGAAAATCTGAATCTGATGAACTTTGTCCCCTGAAGCGAAGAAAAACTGAAGAAAACTGTGGTCCTGAAGAGGCACAAAATGAAGAGAATCGTGGTCCTAAGGAGTCAAAAAATGAAGGTGTTACTGAGAAAATTGTTGAAAGGAGATGCACGGAATCTGAAGCTGATGCTATAGTCCCGGAAACTGATCTAAGCCTGAAGCATCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGGGGAAGTTGTATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGAATTAGGTGCTGATGTGACCTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTTTTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGCACTGTAGATTTTATTGACATAAATATGGGTTGCCCTATTGACATAGTTGTGAATAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAACGCGGATGAGAAGTATAGTAGAAGTAGCTTCGGGTACAGTGGATAAGCCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGAAGACATTGGCTCTTGGGGAGCCAGCGCGGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGATGTGTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCGGAACTTGCTACGGACATGATCGCTCGTGGTGCACTTGTTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGGGAGCGACTAAATATTCTCAAGGATTTTGTGAATTTTGGTCTGGAACACTGGGGTTCTGACACAAAAGCGATTGTTTTGGGGAAGGCTCCTTTTGGACTAGGAACATGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATATACCCGTTGGTCTTTTGGATGTAGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTCGGCAAGGTTCCTGATGACTTTAGATTTGCACCAAAGCATAAATCAAACGCATACGATAGAGCTGAAAATGGTTAA	2127	0.4612	MDEEERDEGSSGPGVVAGGQTPEQLVSRAIAPVKKEFLRPPPVRSAAPDDDVSIPNENKTSVLAKEKKSKRQLKRERRQGQKSARNLCPEIARTGDVSSCPYKDKCRFSHDLEGFKAQKPSDLEGQCPFVKSGVSCPYGLACRFSSTHEGGVPSGVRNGVPSGVRNGPKNSSEVNGLSKEVQKLLWKNKMTFSKADAKLKSVGLLGSSKSIRNDLENKEGVDTGSNKCDHSDDSGSCVVTSDSGSKLDCPAEVMKDDDNDIDGKSESDELCPLKRRKTEENCGPEEAQNEENRGPKESKNEGVTEKIVERRCTESEADAIVPETDLSLKHHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKELGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDFFGVQICGAYPDTVARTVELIEQECTVDFIDINMGCPIDIVVNKGAGSALLTKPTRMRSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIEDIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKAIVLGKAPFGLGTWVETTRRFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDDFRFAPKHKSNAYDRAENG	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03684	708	FunFam	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	339	581	-	-
	Vimu10g03684	708	ProSiteProfiles	Zinc finger C3H1-type profile.	82	113	IPR000571	GO:0046872
	Vimu10g03684	708	Coils	Coil	56	76	-	-
	Vimu10g03684	708	FunFam	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	78	156	-	-
	Vimu10g03684	708	MobiDBLite	consensus disorder prediction	153	175	-	-
	Vimu10g03684	708	Gene3D	Aldolase class I	339	581	IPR013785	-
	Vimu10g03684	708	MobiDBLite	consensus disorder prediction	249	305	-	-
	Vimu10g03684	708	PANTHER	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	21	702	-	-
	Vimu10g03684	708	ProSitePatterns	Uncharacterized protein family UPF0034 signature.	427	445	IPR018517	GO:0008033\|GO:0017150\|GO:0050660
	Vimu10g03684	708	SUPERFAMILY	FMN-linked oxidoreductases	343	608	-	-
	Vimu10g03684	708	Pfam	Dihydrouridine synthase (Dus)	346	580	IPR035587	-
	Vimu10g03684	708	MobiDBLite	consensus disorder prediction	215	305	-	-
	Vimu10g03684	708	Gene3D	-	77	152	-	-
	Vimu10g03684	708	MobiDBLite	consensus disorder prediction	1	87	-	-
	Vimu10g03684	708	MobiDBLite	consensus disorder prediction	215	229	-	-
	Vimu10g03684	708	CDD	DUS_like_FMN	343	578	IPR035587	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Vimu10g03684		Dus	2.1e-50	CL0036

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03684	K05544		-	gmx:100783494	1181.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03684	10	45894651	45901462	Vimu10g03684	10	45894651	45901462	ECH