Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03676 ATGCCAGCTTTGATTTCGTCTAGTTTTCTTCTGCTTGTTGGTGAGTCACTCCACTTAAGAAGGGCTCTGGCCACTTCTAGATCTGTTTTATTGCACACTGGTGTGAAGTGTATGCGCCAGGTGGAACCTAATCATGGTTCCCTCACCCTTTCTAGCATAGGTTTCCAAACTGAAACTGAAGCTGAGAACAGAAGCAAATCTAATAAGGTTAAGTCATTTGGTTCACCCAGTGAGAATCTCAAGAGCAAAGGAAAGCCCTTTGACACTAATGAGAAGAAGAAGAAAGCATTTAGGGTTGTAGAAAAACAACAAATGGAGTTTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGGCTCCCACATGTGTTGATTGAGAGGCTAGAGGAGGAGGGTTTTACTGTTCCGACTGAAGTTCAGTCTGCTGCAGTTCCCTCCATTCTGAACAACCGTGATGTCATAATTCAGTCTTACACTGGTTCAGGGAAGACGCTAGCTTATCTGCTTCCTATTCTCTCGGTTGTTGGACCGCTGAGGGTGAAAGGTGATGATGGTGATGAGAATGGGAAGAAGTTGGGAATCGAAGCAGTGATTGTTGCTCCATCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCGAACCGAACCAGACAGGAAGACGCTCTCAAGAAAAACAAACCTGCAATTGTTGTCGGCACACCTGGTAGGATAGCAGAGCTGAGTGCATCGGGGAAACTTCGCACTCATGGATGTCGATATTTGGTGTTGGATGAAGTTGATGAGCTCTTGTCTTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAAGTGCAGACCCAAGCTCAAATTCAGCAAAGACTGAGCGTCAGTTAATCATGGTTTCTGCAACTGTGCCCTTTTCTGTTGTAAGGGCTGCTAGAAGCTGGGGTTGCGACCCTCTTCTAGTCCAAGCTAAGAAAATTGTCCCACTTGAAACTTTCTCTCCCTCTGAGCCTGTCACTTTATCCCGGTCTTCGCCGAGCTCAGCTATGCCATCTCAAGCAGCAGTGGAGAGTCTGCCTCCTGCTCTGAAACACTATTACTGTGTGACAAGGTTGCAGCACAAAGTTGACGTATTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCTGTGGAGTTACATGGGGATCTAGGGAAGCTTGCTAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAAGTGAGAGTTCTGGTGACAAATGAATTGTCTGCAAGAGGGTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTTGACTTGCCAACAGATTCAATTCATTATGCACACCGGGCTGGCCGAACTGGTAGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAACCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGAAATTCCAATTGCATCCTGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAGAGAAAACATTAAGCACTTCTACAAGTTGA 1665 0.4577 MPALISSSFLLLVGESLHLRRALATSRSVLLHTGVKCMRQVEPNHGSLTLSSIGFQTETEAENRSKSNKVKSFGSPSENLKSKGKPFDTNEKKKKAFRVVEKQQMEFAPFAAKSFSELGLPHVLIERLEEEGFTVPTEVQSAAVPSILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRVKGDDGDENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSSADPSSNSAKTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIVPLETFSPSEPVTLSRSSPSSAMPSQAAVESLPPALKHYYCVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLEIPIASCDFSEGKLLVTEEEKTLSTSTS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03676 554 Pfam Helicase conserved C-terminal domain 399 502 IPR001650 -
Vimu10g03676 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 341 IPR014001 -
Vimu10g03676 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 522 IPR027417 -
Vimu10g03676 554 Gene3D - 379 542 IPR027417 -
Vimu10g03676 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Vimu10g03676 554 MobiDBLite consensus disorder prediction 68 83 - -
Vimu10g03676 554 MobiDBLite consensus disorder prediction 59 88 - -
Vimu10g03676 554 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 32 540 - -
Vimu10g03676 554 SMART ultradead3 132 361 IPR014001 -
Vimu10g03676 554 Gene3D - 78 343 IPR027417 -
Vimu10g03676 554 CDD DEADc 124 342 - -
Vimu10g03676 554 Pfam DEAD/DEAH box helicase 137 327 IPR011545 GO:0003676|GO:0005524
Vimu10g03676 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 541 IPR001650 -
Vimu10g03676 554 CDD SF2_C_DEAD 382 511 - -
Vimu10g03676 554 SMART helicmild6 421 502 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03676 Vimu-Chr10 45829758 45831422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03676 114 535 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 4.71e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03676 - - gmx:100812968 935.25