Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03663 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTCGCCGGAGGCGACGATTTCTTCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTGGAAGAAAAAAAAAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCACTTTTCTCCGCCGAACTAGCTGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTTCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTCTGAAACGAAGATAACGACCAAGACGAGAACCGTACGGAATAGAAAACCAAACACTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCCCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCCTCGACGGAGCCGCCCGCGAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGCCCGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCGCAGTGGAGGACAGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCGAACAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTTTCTGGGCCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA 900 0.5567 MEVAVAKALKPSLRREFIVQQTHCEDFFSLNANTVAGGDDFFVDDLFDFSDGSLHYEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEVNRRVEPEPSAKKTPRFPSETKITTKTRTVRNRKPNTRVWSLGPLLSLPSSPSSCSSSSTEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGPEAHPQAQMVPTC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03663 299 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Vimu10g03663 299 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Vimu10g03663 299 FunFam GATA transcription factor 208 293 - -
Vimu10g03663 299 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vimu10g03663 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Vimu10g03663 299 PIRSF Txn_fac_GATA_plant 16 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu10g03663 299 PANTHER GATA TRANSCRIPTION FACTOR 28 295 - -
Vimu10g03663 299 MobiDBLite consensus disorder prediction 132 210 - -
Vimu10g03663 299 MobiDBLite consensus disorder prediction 176 195 - -
Vimu10g03663 299 MobiDBLite consensus disorder prediction 60 89 - -
Vimu10g03663 299 MobiDBLite consensus disorder prediction 60 82 - -
Vimu10g03663 299 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vimu10g03663 299 MobiDBLite consensus disorder prediction 132 148 - -
Vimu10g03663 299 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Vimu10g03663 299 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03663 Vimu-Chr10 45772432 45773437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03663 40 282 C2C2-Gata Transcription Factor Family AT4G36240 43.307 1.18e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g03663 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03663 - - gmx:100780311 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03663 10 45772432 45773437 Vimu10g03663 10 45772432 45773437 ECH
Vimu10g03663 10 45772432 45773437 Vimu5g02406 5 34750047 34751105 ECH