Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03656 ATGGCTAAGCCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGTGATTGCGTGCTCATGCGACCGTCGGATCCGGCAAAACCCTCATATGTGGCCAGGATCGAAAGGATCGAGGCGGATGCGCGTGGCGCAAATGTGAAAATTAATGTTCGCTGGTACTACAGGCCAGAGGAGTCAATTGGGGGTCGCCGCCAGTTTCACGGCTCAAAGGAGGTTTTTCTCTCTGATCACTTTGATGTTCAGAGCACCGACACAATCGAAGGCAAGTGTACGGTCCACAGCTTCAAGAGCTACACAAAACTGGATGCTGTTGGTAACGATGATTTCTTCTGTCGGTTTGAGTACAATTCCTCCACAGGTGCCTTCAATCCTGATAGAGTTGCAGTGTGA 423 0.4965 MAKPKAPRRTLESYSVKHISKTIRAGDCVLMRPSDPAKPSYVARIERIEADARGANVKINVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSTDTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03656 140 PANTHER OS08G0421900 PROTEIN 5 140 - -
Vimu10g03656 140 SMART BAH_4 21 137 IPR001025 GO:0003682
Vimu10g03656 140 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Vimu10g03656 140 Gene3D - 8 138 IPR043151 -
Vimu10g03656 140 Pfam BAH domain 22 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03656 Vimu-Chr10 45699274 45699827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03656 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 3.94e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03656 K25868 - gmx:100787968 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03656 10 45699274 45699827 Vimu10g03656 10 45699274 45699827 ECH