Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03654 ATGATCATTCCGGAGAAGAACCGTAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGATGTGCCTAATTTGCAGGTGATTAAGCTGATGCAAAGCTTCAAGTCCCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTATTACTGGTTCCTCACCAATGATGGCATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAGCCACCTGGCAGACCCTTTGGTGGCCCATCCGGTGATCGCCCTAGGGGTCCACCTCGCTTTGAAGGCGAGCGGAGGTTTGGTGGTGATCGTGACGGATATCGTGGAGGTCCCCGAGGACCTGGTGGAGACTTTGGAGGAGACAAAGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGGTAATTCCATTGTCAATGCAGTTCTATAGTTGTTTACTGTTGGATCTGGAGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGGGCGCCAACCAGCTCAAATATTCCTTAAAGTTTCCCAACACTTGATCGAGGACATGGCGGCTGTCAAGGAATTTGGGGTGTCTCAATTCGTGCAGATCACTAGGTGCTGCGTGTTTAATTTACCAGATGAAGTGCAACAGTGTTTCATTGGTCTTCCCTTTCCCTTGTGTTTTTCCCCCCCTTTACTGTTGTACTACGGTACTTCTAGGCAAACTTTGTTTTTGAAGAAGAAGCCTCATAGACAGAGAAATCACATGCTATGGGGTACGCTTTGGAATAGGAATTGGGCTCTGGGATCAACTCGTAGAGCTTTGCATTTAAGGTGTCAGGCTCAAGAAAATCCCAGAGCTGTGGTTTCTGGGAGTGTGAGCTCTTCTGTAGAAGAACAACCTGGCTTGGTTCAGAAGCCTGCTTCAGAAGTTGATCATCTATACCGAGTCCCATTTATGCAAGAAAGTGCAGCTGCCGAGCTTCTAAAGGAAGCTCAAGTGAAAATATCTAGTCAGATTGTGGAAATACAAACGGAGCAATGTTATAATATTGGCCTTAGTTCACACCTTTCCACTGGAAAATTTTCAGTTCTTAAATGGCTTCTTCAAGAAACTTTTGAGCCTGAGAATCTTGGAACTGAGAGCTTTCTTGAGAAGAAGAGGAAGGAGGGTTTGAGTCCAATTATAGTTGAGGTTGGTCCCAGGTTGTCATTTACCACAGCGTGGTCTACTAATGCGGTAGCAATTTGCCAAGCCTGTGGATTGACAGAAGTGACTCGTTTGGAACGGTCAAGGAGGTACTTGTTATTCACCACAAGTGAGCTGCAAGATCATCAAATCAGTGAATTTGCATCTATGGTGCATGATAGGATGACCGAGTGTGTTTATTCTCAGAAGCTAACATCCTTTGAGACCAGTGTTGTTCCTGAGGAGATTCGTTATATACCTGTTATGGAGAAGGGACGAAAGGCATTAGAAGAGATTAATTTGGAGATGGGTTTTGCCTTTGATGACCAGGATTTGGAATATTACACCAAACTTTTCAGAGAAGACATTAAGCGCAACCCAACCAATGTAGAGTTGTTTGATATTGCTCAATCCAACAGTGAGCATAGTAGACATTGGTTTTTTACCGGAAAGATTTATATTGATGGGCAGCTTATGGAGAAAACTCTAATGCAGATTGTGAAAAGTACTTTGCAGGCAAATCCCAACAATTCAGTTATTGGCTTTAAGGATAACTCAAGTGCAATCAGGGGTTTCCCAGTGAAGCAGCTCCGCCCGGTTCGGCCCGGTTCATCATGTCCTCTAGAAGTTGCAGTACGTGAGTTGGATATCTTGTTTACAGCTGAAACACATAATTTTCCGTGTGCAGTGGCACCTTATCCTGGTGCAGAGACAGGTGCTGGAGGTCGCATTAGGGATACACATGCTACAGGAAGAGGGTCCTTTGTTCAGGCAGCTACAGCTGGTTATTGTGTTGGAAATCTCAACACATCAGGTTTTTATGCTCCATGGGAAGATCCCTCCTTTACTTATCCATCAAATTTGGCACCACCTTTACAGATTCTTATAGATTCTAGTAACGGTGCATCTGACTATGGCAACAAATTTGGAGAGCCATTGATTCAGGGTTTCTGTAGAACTTTTGGAATGAGACTTCCCAGTGGGGAAAGGCGAGAATGGTTGAAGCCAATCATGTTTAGTGCAGGCATTGGACAAATAGACCACCTTCATATATCAAAGGGAGATCCTGACATTGGGATGCTGGTTGTCAAAATTGGAGGCCCAGCTTATCGCATTGGCATGGGAGGTGGAGCAGCCTCAAGCATGGTCAGTGGGCAGAATGATGCAGAGCTTGATTTCAATGCTGTGCAACGTGGGGATGCTGAGATGGCTCAAAAACTATATCGTCTTGTTCGTGCATGTATTGAGATGGGGGATAAAAATCCAATTATTAGCATTCATGATCAAGGTGCTGGTGGTAACTGCAATGTTGTGAAGGAAATTATATATCCAAAAGGTGCTGAGATAGATGTCCGAGCAATTGTGGTTGGTGATCATACGATGTCTGTTCTAGAAATTTGGGGAGCAGAGTATCAGGAGCAAGATGCAATCTTGGTGAAGCCTGAAAGTCGTGATCTCTTGGAATCAATCTGTAGCAGGGAAAAAGTTTCAATGGCAGTTATTGGAACTATCAGCGGCGATGGACGTGTTGTGTTGGTTGATAGCTTGGCAACTCAGAAGAGTATTTTGCATGGACTTCCTCCACCTCCTCCTGCGGTTGATCTTGAACTGGAGAAAGTCCTTGGTGACATGCCCAAAAAATCTTTTAAATTTAATCGGGTCGTCTATGAGCGAGAGCCACTTGATATTGCACCTGGGATTGCAGTGATAGATTCTCTGAAGAGGGTACTGAGTTTACCATCGGTCTGTTCGAAACGCTTCTTAACTACAAAAGTTGATAGGTGTGTTACTGGTCTGGTGGCACAACAACAAACCGTTGGCCCTTTGCAGATCCCCCTTGCTGATGTTGCTGTTACAGCTCAAACTTTTAATGATTTGACTGGCGGTGCTTGTGCCATTGGAGAACAACCAATCAAAGGCCTGTTAGATCCCAAAGCAATGGCTCGGTTGGCGGTTGGAGAAGCATTAACAAATCTTGTATGGGCACAGGTCACTTCCCTTTCTGATGTCAAGGCTAGTGGTAACTGGATGTATGCTGCCAAGCTTGATGGGGAAGGAACTGACATGTATGATGCTGCCGTAGCTTTATCTGAAGCAATGATTGAACTTGGCATTGCTATTGATGGAGGGAAAGACAGCCTTTCTATGGCAGCCCATGCTGAAAAAGAAGTTGTCAAGGCTCCCGGAAATCTTGTCATCAGTGTTTATGTTACTTGTCCTGATATAACAAAAACAGTAACACCAGATTTAAAACTCAAGGATGAAGGTGTTTTGCTTCATATTGATTTGTCAAGAGGTAAGAGGCGGTTAGGAGGATCTGCTCTTGCCCAAGCATTTGACCAAGTTGGGGATGACTGTCCTGATCTTGATGATGTTCCTTATCTTAAAAAGGTATTTGAAGGTGTTCAAGATCTTCTTACTCATGAACTGATTTCTTCTGGTCATGATATTAGTGATGGTGGGCTTCTTGTTTGTGCATTAGAGATGGCATTTGCTGGTAATTGTGGACTTAGTTTGAACATGTCATCTCAAGGTAACAGTCTCTTCCAAACACTCTATGCTGAAGAGCTTGGTTTAGTTCTTGAAGTAAGCAAGAAAAATCTGGCTTTGGTAATGGATAAATTAAACAATGTGGGAGTTTCAGCTGAAATCATTGGTCAAGTAACAGCCAATCCATCTATAGAAGTCAAGGTTGATGGCGAGACTTGTTTATCTGAAAAAACTAGTATCCTTAGGGACATGTGGGAGGAGACCAGTTTTCAACTTGAAAAGTTTCAAAGACTAGCGTCTTGTGTAGATATGGAGAAAGAAGGACTGAAACATCGGTATGAGCCCTCATGGGATCTCACCTATCTTCCTGTTTTCACTGACAAAAAGTTTTTGCTTGCAACTACAAAACCTAAAGTGGCTGTGATTAGAGAAGAAGGGAGCAACGGAGATAGAGAAATGGCTGCAGCGTTTTATGCTGCTGGTTTTGAGCCATGGGATATTACTATGTCGGACCTTCTCAATGGAAAGATTTCTTTGCATGAGTTCCGTGGAATTGTGTTTGTTGGTGGATTTAGCTATGCTGACGTGCTTGACTCCGCAAAAGGCTGGTCTGCTTGCATAAGATTTAATGAACACGTTTTGCAACAATTTCAGGAGTTTTACAAACGTCCAGACACTTTTAGTCTTGGTGTATGCAATGGGTGTCAGCTAATGGCTTTGTTAGGGTGGGTGCCTGGTCCGCAAATTGGAGGTGTGCATGGTGCTGGTGGTGACCTATCTCAACCAAGGTTCATTCATAACAAGTCAGGGAGGTTTGAATGCCGCTTTACAAGCGTGACCATAAAGCCCTCACCGGCTATAATGTTCAGTGGCATGGAGGGTAGTACATTGGGTATATGGGCTGCTCATGGTGAGGGAAGAGCTTATTTTCCAGATGAAGGTGTGTTTGACAGAATAGTTCACTCTGACCTAGCTCCTGTAAGATATTGTGATGATGCTGGGAATCCAACAGAGGCATACCCTTTCAATGTGAATGGCTCTCCCTTAGGGGTAGCAGCTATTTGTTCCCCAGATGGGAGGCATCTTGCCATGATGCCTCATCCAGAGCGTTGCTTCTTAATGTGGCAGTTCCCATGGTACCCAAAGCACTGGCACGTGGAGAAGAATGGGCCTAGTCCTTGGTTGCGCATATTCCAGAATGCAAGAGAGTGGTGTTCCTGA 4944 0.4458 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGVIPLSMQFYSCLLLDLEEGLALVVDLVVLGRQPAQIFLKVSQHLIEDMAAVKEFGVSQFVQITRCCVFNLPDEVQQCFIGLPFPLCFSPPLLLYYGTSRQTLFLKKKPHRQRNHMLWGTLWNRNWALGSTRRALHLRCQAQENPRAVVSGSVSSSVEEQPGLVQKPASEVDHLYRVPFMQESAAAELLKEAQVKISSQIVEIQTEQCYNIGLSSHLSTGKFSVLKWLLQETFEPENLGTESFLEKKRKEGLSPIIVEVGPRLSFTTAWSTNAVAICQACGLTEVTRLERSRRYLLFTTSELQDHQISEFASMVHDRMTECVYSQKLTSFETSVVPEEIRYIPVMEKGRKALEEINLEMGFAFDDQDLEYYTKLFREDIKRNPTNVELFDIAQSNSEHSRHWFFTGKIYIDGQLMEKTLMQIVKSTLQANPNNSVIGFKDNSSAIRGFPVKQLRPVRPGSSCPLEVAVRELDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVQAATAGYCVGNLNTSGFYAPWEDPSFTYPSNLAPPLQILIDSSNGASDYGNKFGEPLIQGFCRTFGMRLPSGERREWLKPIMFSAGIGQIDHLHISKGDPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRLVRACIEMGDKNPIISIHDQGAGGNCNVVKEIIYPKGAEIDVRAIVVGDHTMSVLEIWGAEYQEQDAILVKPESRDLLESICSREKVSMAVIGTISGDGRVVLVDSLATQKSILHGLPPPPPAVDLELEKVLGDMPKKSFKFNRVVYEREPLDIAPGIAVIDSLKRVLSLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVTAQTFNDLTGGACAIGEQPIKGLLDPKAMARLAVGEALTNLVWAQVTSLSDVKASGNWMYAAKLDGEGTDMYDAAVALSEAMIELGIAIDGGKDSLSMAAHAEKEVVKAPGNLVISVYVTCPDITKTVTPDLKLKDEGVLLHIDLSRGKRRLGGSALAQAFDQVGDDCPDLDDVPYLKKVFEGVQDLLTHELISSGHDISDGGLLVCALEMAFAGNCGLSLNMSSQGNSLFQTLYAEELGLVLEVSKKNLALVMDKLNNVGVSAEIIGQVTANPSIEVKVDGETCLSEKTSILRDMWEETSFQLEKFQRLASCVDMEKEGLKHRYEPSWDLTYLPVFTDKKFLLATTKPKVAVIREEGSNGDREMAAAFYAAGFEPWDITMSDLLNGKISLHEFRGIVFVGGFSYADVLDSAKGWSACIRFNEHVLQQFQEFYKRPDTFSLGVCNGCQLMALLGWVPGPQIGGVHGAGGDLSQPRFIHNKSGRFECRFTSVTIKPSPAIMFSGMEGSTLGIWAAHGEGRAYFPDEGVFDRIVHSDLAPVRYCDDAGNPTEAYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPKHWHVEKNGPSPWLRIFQNAREWCS 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03654 1647 SUPERFAMILY FGAM synthase PurL, linker domain 490 557 - -
Vimu10g03654 1647 FunFam 40S ribosomal protein S10 1 104 - -
Vimu10g03654 1647 SUPERFAMILY PurM N-terminal domain-like 978 1158 IPR036921 -
Vimu10g03654 1647 CDD GATase1_FGAR_AT 1380 1643 - -
Vimu10g03654 1647 CDD PurL_repeat1 542 925 - -
Vimu10g03654 1647 Gene3D - 1 104 IPR036388 -
Vimu10g03654 1647 SUPERFAMILY PurM N-terminal domain-like 558 764 IPR036921 -
Vimu10g03654 1647 Gene3D - 551 756 IPR036921 -
Vimu10g03654 1647 Hamap Phosphoribosylformylglycinamidine synthase [purL]. 326 1647 IPR010073 GO:0004642|GO:0006189
Vimu10g03654 1647 Pfam CobB/CobQ-like glutamine amidotransferase domain 1377 1646 - -
Vimu10g03654 1647 SUPERFAMILY PurS-like 329 485 IPR036604 -
Vimu10g03654 1647 FunFam Phosphoribosylformylglycinamidine synthase, putative 757 935 - -
Vimu10g03654 1647 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vimu10g03654 1647 CDD PurL_repeat2 1026 1299 - -
Vimu10g03654 1647 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1379 1623 - -
Vimu10g03654 1647 FunFam Phosphoribosylformylglycinamidine synthase, putative 966 1150 - -
Vimu10g03654 1647 Gene3D - 1146 1322 IPR036676 -
Vimu10g03654 1647 NCBIfam phosphoribosylformylglycinamidine synthase 330 1645 IPR010073 GO:0004642|GO:0006189
Vimu10g03654 1647 FunFam Putative phosphoribosylformylglycinamidine synthase 490 550 - -
Vimu10g03654 1647 Pfam Formylglycinamide ribonucleotide amidotransferase N-terminal 363 481 IPR040707 -
Vimu10g03654 1647 Gene3D - 1323 1647 IPR029062 -
Vimu10g03654 1647 Gene3D Phosphoribosylformylglycinamidine synthase, linker domain 490 550 - -
Vimu10g03654 1647 SUPERFAMILY PurM C-terminal domain-like 767 1001 IPR036676 -
Vimu10g03654 1647 FunFam Phosphoribosylformylglycinamidine synthase, putative 1322 1647 - -
Vimu10g03654 1647 SUPERFAMILY PurM C-terminal domain-like 1165 1372 IPR036676 -
Vimu10g03654 1647 Gene3D - 967 1145 IPR036921 -
Vimu10g03654 1647 SMART GATase_5_2 1377 1646 - -
Vimu10g03654 1647 MobiDBLite consensus disorder prediction 93 145 - -
Vimu10g03654 1647 Pfam Formylglycinamide ribonucleotide amidotransferase linker domain 507 556 IPR041609 -
Vimu10g03654 1647 MobiDBLite consensus disorder prediction 112 128 - -
Vimu10g03654 1647 Pfam AIR synthase related protein, C-terminal domain 1180 1309 IPR010918 -
Vimu10g03654 1647 Pfam AIR synthase related protein, C-terminal domain 770 923 IPR010918 -
Vimu10g03654 1647 SUPERFAMILY Class I glutamine amidotransferase-like 1375 1646 IPR029062 -
Vimu10g03654 1647 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 325 1647 - -
Vimu10g03654 1647 FunFam Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 1156 1322 - -
Vimu10g03654 1647 Gene3D - 757 933 IPR036676 -
Vimu10g03654 1647 FunFam Probable phosphoribosylformylglycinamidine synthase 551 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03654 Vimu-Chr10 45681350 45690732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03654 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 82.581 1.27e-66 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03654 K01952 - gmx:100818572 2625.51