Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03651 ATGGCAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCCGTGCCTATGCTTTGTCTTAGGGAGCCTTTGCATAATTCGTATCCCGAGACACCAATTTTGCCAAGCAATATGACATTGTTGTATATGAACTCTGGTTCATATTCTGAAGCATTACCTGGAAATTCTCAGCAGCAAAGCAATTGCTTTGTGGTTCCATCACCGTCAGTGGGTGCTTCAAATTCCACAGCTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCAAATTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAATCTATAGATGGACATAACTTGCAGGGCCAGGGATTATCTTTAAGCCTTGGAACCCACATGCCCTCAGGAATTCAACTGCCTTCTGTCCATGATAGGAATCATTGCTCAAATCTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAACGAGGTCTACCAAAATGGCTCCTCTAGACATTCTGAAAATTTTGCTCCTGTGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCCTGGAATTTCCAGTGTTGGAAGAACGGTTCCTAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTCACGGAACACATGAGAACTCTCCAAAGAATTCCAAGGAGGGTGGTGAGCTCCTAGAAAATGAACGGCCTTCTGCAAATGGTGTGCCAAATTCTCAACCCTCAGCCAGCAACTCTTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGAACAAGAAGTTAGCAAAGCTTCGGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAGATGCAGAACGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACAGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATTCAATCACTGGACAAATTCGTGCAACACAAAAGAGCCTTGGGGAGCATGATGCTTCAGAAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTTTGTGGACCATCAAGTGCGACAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTCCGCGCATGGCTTTTTGAGCATTTCCTTCATCCATACCCAAAGGATTCCGAAAAGACCATGCTAGCAAGACAGACAGGCTTGACCCGAAGTCAGGTCTCAAATTGGTTCATAAATGCTCGTGTGCGTCTGTGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGTGGACATAGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGTTGATGATTCACAGCACTGTCAGAGTCCAATAGTAACCGATACAAATCATGGTGGTGGACAAGCTAAGGACTTTGGATATGATCAAGTTCTTGATGCAAAAATTATGGCATCCACTGGATTAGCTAGTCATGAGGTTGAAACAGAACATAGGTCAGGAAAGCAGTCTGGGGAGAAAAGGCCAAATTTGGATAATTGTGGTCTCTTCTCTGATAACATGGTTGTTCAATCTGATAGAGCTACTAATGATGACAGGTTTATAGCAGTTGGTTCAACGTGCCAAATGTCAGAGTTTGAGAGCTTCAAGTCAGGAAGTGGAGTGTCTCTAACTCTGGGTTTACAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTCAGTTTGGTTTCCATGAGGGAAAATGGCATCTACCGCAGTGCAGCTGCAGCTTCTACAGTTGGAGTACATACAGCAGAACTTGAGCACGTTGGTGCTGGAAACCAGCGACAGAGGTTCAGTTCACCTCATATGTTACATGATTTTGTTGTGTGA 2022 0.4362 MATYYPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTLLYMNSGSYSEALPGNSQQQSNCFVVPSPSVGASNSTAEQQEILANIGGYQIGVHDFSAWREGRSEMLVRQSIDGHNLQGQGLSLSLGTHMPSGIQLPSVHDRNHCSNLDSFLGANPSLSANEVYQNGSSRHSENFAPVLPEASHDLNKADFSFPGISSVGRTVPSSKYLKAVQQLLDEVVDIRQAIKRPETRSHGTHENSPKNSKEGGELLENERPSANGVPNSQPSASNSSCELSHAEKQDLNKKLAKLRSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQIRATQKSLGEHDASESNKGVGMARLKFVDHQVRQQRALQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDVDIDSTSSSENVSKATKSDVKISNDTVDDSQHCQSPIVTDTNHGGGQAKDFGYDQVLDAKIMASTGLASHEVETEHRSGKQSGEKRPNLDNCGLFSDNMVVQSDRATNDDRFIAVGSTCQMSEFESFKSGSGVSLTLGLQHCEGGNFLPGETHLSLVSMRENGIYRSAAAASTVGVHTAELEHVGAGNQRQRFSSPHMLHDFVV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03651 673 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Vimu10g03651 673 Gene3D - 393 470 - -
Vimu10g03651 673 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Vimu10g03651 673 MobiDBLite consensus disorder prediction 539 553 - -
Vimu10g03651 673 SMART HOX_1 397 461 IPR001356 GO:0003677
Vimu10g03651 673 MobiDBLite consensus disorder prediction 227 252 - -
Vimu10g03651 673 Pfam Associated with HOX 203 347 IPR006563 -
Vimu10g03651 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 479 - -
Vimu10g03651 673 MobiDBLite consensus disorder prediction 537 560 - -
Vimu10g03651 673 CDD homeodomain 397 458 IPR001356 GO:0003677
Vimu10g03651 673 SMART prehox3 197 348 IPR006563 -
Vimu10g03651 673 Coils Coil 280 307 - -
Vimu10g03651 673 MobiDBLite consensus disorder prediction 227 278 - -
Vimu10g03651 673 MobiDBLite consensus disorder prediction 257 277 - -
Vimu10g03651 673 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03651 Vimu-Chr10 45673038 45676635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03651 27 673 Homeobox Transcription Factor Family AT4G34610 37.936 8.47e-122 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu10g03651 POX 5.7e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03651 - - vra:111240485 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03651 10 45673038 45676635 Vimu10g03651 10 45673038 45676635 ECH