Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03641 ATGGCTTCGTCGAGTGGAACATCTTCAGGGTCGTCTCTGCTTCAGAATTCGGGTTCAGAGGAGGACCTGCAGGCGGTGATGGATGAGAGGAAGAGGAAGAGAATGATATCGAACCGCGAATCGGCGAGGCGATCCCGAATGAGGAAGCAGAAGCACTTGGATGATCTGGCATCACTGGTGACTCAGCTGAGGAACGAGAATCACCAGATTCTGACATCGGTGACCCTCACCACCCAGAAGTACTTGGCGGTGGAGGCGGAGAACTCGGTGCTGAGAGCACAGGTAAGCGAGTTGAGCCACAGGTTAGAGTCTCTGAACGAGATCAACCACTTCTTGAACGCCACCAATGGTGTCTTTGGGCCTCCGGGCCCATCTCCAACCTCCTTCCTTGAGCCCGAGGGTAGTAGCAACTTCTTCAACAACCCTTTCAACATGGCATATCTCAGCCAACCGATCATGGCTTCTGCAGATATGTTGCAGGAGATTGTAATCGGTGGTGGCAGAGAGAGAGAGAGAGGGAGAAAGAGAGTGAGTGCGATAGGGAATAATGATGAATGTGTATCATATGATAAAGTAGGTAAGCTTGTTGGTGCTGCTTCTGTGAATGGGCCCTGTGCTCTTCTCATATCAGATCATCCTATTATTGCAGCAACTTTTTCACGTGCTAGGACCAAGGTTTTCAGAGCAAGTATCTCTAGACATGGTACTGAAATCTCAGAGCTGAAAGTCATGGGTGGAGAGTTTCTTGCAATAGCAAAGGCTGCTTGCTCCTTGATATTGGAGTTAATGCCTCAAAAAGTTAAACCTAAAAGCATGCGAAGGAGGTACTTCCAGGAAGCAACATTGGACTGTCTAGAATACACTGTCGGAGAAAACCATGAGATCTGA 888 0.4876 MASSSGTSSGSSLLQNSGSEEDLQAVMDERKRKRMISNRESARRSRMRKQKHLDDLASLVTQLRNENHQILTSVTLTTQKYLAVEAENSVLRAQVSELSHRLESLNEINHFLNATNGVFGPPGPSPTSFLEPEGSSNFFNNPFNMAYLSQPIMASADMLQEIVIGGGRERERGRKRVSAIGNNDECVSYDKVGKLVGAASVNGPCALLISDHPIIAATFSRARTKVFRASISRHGTEISELKVMGGEFLAIAKAACSLILELMPQKVKPKSMRRRYFQEATLDCLEYTVGENHEI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03641 295 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Vimu10g03641 295 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g03641 295 Coils Coil 88 108 - -
Vimu10g03641 295 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vimu10g03641 295 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vimu10g03641 295 MobiDBLite consensus disorder prediction 23 50 - -
Vimu10g03641 295 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
Vimu10g03641 295 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 160 - -
Vimu10g03641 295 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Vimu10g03641 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Vimu10g03641 295 MobiDBLite consensus disorder prediction 1 50 - -
Vimu10g03641 295 FunFam BZIP transcription factor 28 79 - -
Vimu10g03641 295 Gene3D - 28 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03641 Vimu-Chr10 45637218 45640965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03641 24 159 bZIP Transcription Factor Family AT4G34590 54.745 1.02e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g03641 bZIP_1 1.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03641 K25786 - gmx:778171 218.394