Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03632 ATGAAAGCCCATTACCAAAATGGCCCAGATGAATTGCCTCACTTCGCCGTCTCCAATCTCAGGGCTCCTGTCGTCTGTGATCGAAATCCATGGCAAGCTCCAAAGAAGGACAAGGCTCCCCCACCTTCATCAAAGCCCGCCAAGTCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTGCTGTTTGATCAGGGTACCTATGACAAGCTCCTCTCCGAGGCACCAAAATACAAGCTTATTACTCCATCCATTCTCTCTGATCGTCTTAGGATTAATGGATCACTTGCAAGGAAGGCTATACGGGAATTGATGGCTAGAGGTTCAATCAGGATGGTGTCTGCCCATGCAAGTCAGCAGATTTACACTAGAGCTACAAACACCTAG 420 0.4833 MKAHYQNGPDELPHFAVSNLRAPVVCDRNPWQAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03632 139 PANTHER 40S RIBOSOMAL PROTEIN S25 33 139 IPR004977 -
Vimu10g03632 139 Gene3D - 52 139 - -
Vimu10g03632 139 MobiDBLite consensus disorder prediction 26 67 - -
Vimu10g03632 139 FunFam 40S ribosomal protein S25 52 139 - -
Vimu10g03632 139 Pfam S25 ribosomal protein 39 136 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03632 Vimu-Chr10 45596647 45598386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03632 33 138 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 92.453 1.46e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03632 K02975 - gmx:100499810 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03632 10 45596647 45598386 Vimu10g03632 10 45596647 45598386 ECH