Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03620 ATGTTGCACTGTGCGAACACGTCGGGGAATCTGGCTGGGGACATGACAGTGTGGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGCTACTTTTCTGCGTTCGACGCTCTTTTCTCTTCTTCTTCTCAAGATTCCTTCCTGCTGCCTGCTGATTCCGGTTGTGCGCTTGGTGAAGTCGTTGCTCAGGCTCAGGCTCAGCCTCAGCCTAAGCCTCGCCCCATGAATAAGCCATCTGTTCATGGGTTTGATGAAAGTTCTTCGATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCAGGCCCACTGGCTCTTCGATTGGGAAAGAGAGTTCCAAGAAAAGGAAACCCGAGAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATACGAAAGACAAGAGGATCAAACTGGGTTCCGACGACGATGAACAATCCAAAATCACAGGGAGCCCCAACAGTAACGCCAACACCGATAGCAACAAAAGAGAAACTTGTGCGGATACTTCAAATTCGAAGCAAAATTCCAAAGTCTCCGAGATTCAAAATCAAAAGCCCGATTACATTCACGTCCGCGCGCGTCGCGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTGAGCATTCTGTCTCAACTTTTTACTCAGGTTAGAAGGGAAAAAATCAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACCTTAGTATTGATGATCTATTTGAAAAAGAGGTGTTTCCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCAGATTTGACGAACTCTGGCTATGTTCAATTCAATTCACCACAAGAAATGGTGTCGTATGGGGGATTAGACACGGTGATTAACCCTCCCTACATGGGCCTAAAAAGGAGTATAAGTGCCCATGTATCAGTGCCTGAAACATATCTTCACTCGGTAGGTTTCTCCTCTCTTAATTTTCCTATTCCTTCTTGTTATATTGCTCAATTTGATCTCATTTTTCTTATCATGTAG 1143 0.4462 MLHCANTSGNLAGDMTVWERQRARMKWQEEQGYFSAFDALFSSSSQDSFLLPADSGCALGEVVAQAQAQPQPKPRPMNKPSVHGFDESSSISRTFSCPPALVEPRPTGSSIGKESSKKRKPEKLHNAKFVTENDTKDKRIKLGSDDDEQSKITGSPNSNANTDSNKRETCADTSNSKQNSKVSEIQNQKPDYIHVRARRGQATDSHSLAERVSILSQLFTQVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEVFPCAANFPNIGMSSDLTNSGYVQFNSPQEMVSYGGLDTVINPPYMGLKRSISAHVSVPETYLHSVGFSSLNFPIPSCYIAQFDLIFLIM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03620 380 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 96 302 IPR024097 GO:0006355
Vimu10g03620 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 279 IPR036638 GO:0046983
Vimu10g03620 380 MobiDBLite consensus disorder prediction 66 185 - -
Vimu10g03620 380 SMART finulus 221 267 IPR011598 GO:0046983
Vimu10g03620 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Vimu10g03620 380 MobiDBLite consensus disorder prediction 149 185 - -
Vimu10g03620 380 Gene3D - 198 282 IPR036638 GO:0046983
Vimu10g03620 380 FunFam Basic helix-loop-helix transcription factor 198 280 - -
Vimu10g03620 380 MobiDBLite consensus disorder prediction 112 148 - -
Vimu10g03620 380 CDD bHLH_AtBPE_like 191 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03620 Vimu-Chr10 45552976 45554494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03620 14 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.120 1.48e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g03620 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03620 - - gmx:100798855 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03620 10 45552976 45554494 Vimu10g03620 10 45552976 45554494 ECH
Vimu10g03620 10 45552976 45554494 Vimu7g02932 7 24678002 24679497 ECH