Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03617 ATGGCTTCTGCAGAAGTTGAGTTCCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACTGACAGCGATGCTCTTGAGAAAGCCTTCTCACCGTATGGCCAGATCCTCGAATCGAAGGTCATCAACGACCGCGAAACTGGAAGATCGAGAGGATTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCCATCGATGGTATGAATGGCCAGAACCTTGACGGCCGTAACATCACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGTGGTGGTGGTGGCGGAGGCGGTGGTTATGGAAGCGGCGGCGGTGGAGGTTATGGTGGGGGTAGCGGTGGAGGAGGATATGGACGAGGTGGTGGAGGAGGTGGTTACGGTGGAGGCGGCCGCCGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGGGGTTATGGCGGGGGCGGCGGTGGATACGGAGGTGGTGGTGGTGGTTATGGAGGTAGTAGAGACCGTGGATATGGGGACGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCGTCCGATGGTGGAAGCTGGAGGAATTAG 564 0.5904 MASAEVEFRCFVGGLAWATDSDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQAMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGGGGGYGSGGGGGYGGGSGGGGYGRGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGGYGGSRDRGYGDGGSRYSRGGGASDGGSWRN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03617 187 MobiDBLite consensus disorder prediction 152 187 - -
Vimu10g03617 187 Gene3D - 2 107 IPR012677 -
Vimu10g03617 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vimu10g03617 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vimu10g03617 187 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vimu10g03617 187 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Vimu10g03617 187 FunFam Glycine-rich RNA-binding protein GRP1A 2 117 - -
Vimu10g03617 187 CDD RRM2_NsCP33_like 9 84 - -
Vimu10g03617 187 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03617 Vimu-Chr10 45532651 45533496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03617 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 41.667 5.06e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03617 - K13195 gsj:114414485 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03617 10 45532651 45533496 Vimu10g03617 10 45532651 45533496 ECH