Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03616 ATGGGGATAGTGTGGTTCCGGTTGTTGTTGTTGCTGGTGGTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCTCTGAAGAGCGAGAATCGTTACTTGAACTGAGGGCTTCTCTGGGGTTGAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGTTTACTCTGGGTTGGCATCACATGCCAGAATGGTCGTGTCGTTGGGATCAGTATCTCTGGGTTTAAAAGAACCAGACTTGGGAGGAAGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCCTCTAATTTCCTCCTTCCTGGACCTATTCCCGATTGGTTTGGTCTCTCCCTTCCTTCTCTCAGAGTGCTTGATCTTCGTTCTTGTTCCATTGTGAATGCTATTCCCTCCACTCTCGGCAATTTGACCAACCTCTCTAGTCTCTATCTTTCTGACAACAACCTCATTGGGAATGTTCCGGAGTCTCTGGGTCAACTCTCTGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTCGCTGGCTCCATACCAACATCTTTTGCCTTTCTTGGGAATCTTTCTTCCCTTGACATGTCTACTAATTTTTTGTCGGGGCCGATTCCCCCTGAAATAGGGTCTCTTTCCAGGTTACAGTACTTGAATCTTTCCAACAACGGACTTGCCACTTTGCCTACTCAATTGGGGGGTCTAACTAGCTTAGTTGTCCTTGATCTTAGTCAGAATTCTTTTGCCAGTGGAGGACTGCCTCAGGATTTGGTTGGGTTTAGGAACTTGCGCCAGATGATACTCACAAACAGCATGCTCACGGGGGCTCTGCCAGGGAGATTGTTTACTGGTTCGTTGCAGTTGCAGTTCCTAGTGCTGAAGCAGAACAATTTTAGTGGTGCTTTACCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTTGATGTGTCTGCCAATAATTTCAGTGCTCTGCTTCCTAATTCGAGTTTGGCTGCTAATGCTACTGTTGCGGTGCTCAATATTTCGCACAATAAGTTTTATGGAAACCTCACTCCTGCTTTAAGAAGGTTTGGGTTTATTGATCTTTCAAACAACTATTTTGAGGGCAAGGTTCTGGATTTCATGCATAATGTATCTCTAGGTAGCAACTGTCTCCAGAACGCCACAGATCAGAGGTCAACAGCGGAATGTGCATCGTTTTATGCAGAGAGGGGGCTCAGTTTTGATAATTTTGGACAGCCGAATACAACAACACCTCCTGTCTCAGAAAGCTCCAGGAAGAGCAATAAGACTAAGATTATACTAGCTGCAGTCTTGGGTGGATTGGGTTTAATTGCACTTTTGGTGTTGCTAGTGGTTCTGTTGCTTCTGTGTGTTCGTAAGAGGGGTAACTCAAGTCAGAGAGGAAATGGTGTGGGTCCTGCGCCTGTTGGCAGCAGTCCTCCAAACCCCGGTGTACCAATCGAATTTCCAAATGTAGGGGACTCATTTACATATCATCAGCTGCTCCAGGCAACAGGAGATTTCAATAATGCAAATCTTATCAAACATGGACACACTGGGGACTTCTTCAATGGTGTTTTGGAAAGTGGGATTCCTGTCGTCATCAAAAGGATCGACATGCGTTCAGCTAAAAAAGAGGCTTACCTGTCGGAGTTGGAGTTCTTCAATAAGGTTTCTCATCAGAGATTCGTTCCATTGTTAGGTCATTGTTTAGAAAATGAGAATGAGAAGTTTCTGGTTTATAAAAGCATGCCAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACTACATCCGAGGATGGTACTTTGCAATCACTGGACTGGATAACCAGGTTAAAAATTGCTACTGGAGCCGCAGAGGCCCTGTCGTATCTACATCATGAATGTGTGCCACCCATTGTTCACAGGGATATTCAAGCAAGCAGTATACTTCTTGACGACAAATACGAAGTTCGGTTGGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGACATTCATCAAAGTAAGATCACCCGGTTTCTGCGGTTGCCACAGTCCTCAGACCAAGGCCCATCTGGTAAGTAG 2094 0.4561 MGIVWFRLLLLLVVSQVTLEQIEPLSSSEERESLLELRASLGLRSKEWPRKPDPCLLWVGITCQNGRVVGISISGFKRTRLGRKNPQFAVDALANFTLLQSFNASNFLLPGPIPDWFGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLSSLYLSDNNLIGNVPESLGQLSALSVLDLSRNSLAGSIPTSFAFLGNLSSLDMSTNFLSGPIPPEIGSLSRLQYLNLSNNGLATLPTQLGGLTSLVVLDLSQNSFASGGLPQDLVGFRNLRQMILTNSMLTGALPGRLFTGSLQLQFLVLKQNNFSGALPVELWSLPRLSFLDVSANNFSALLPNSSLAANATVAVLNISHNKFYGNLTPALRRFGFIDLSNNYFEGKVLDFMHNVSLGSNCLQNATDQRSTAECASFYAERGLSFDNFGQPNTTTPPVSESSRKSNKTKIILAAVLGGLGLIALLVLLVVLLLLCVRKRGNSSQRGNGVGPAPVGSSPPNPGVPIEFPNVGDSFTYHQLLQATGDFNNANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSAKKEAYLSELEFFNKVSHQRFVPLLGHCLENENEKFLVYKSMPNGDLSNCLYYKNTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSDQGPSGK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03616 697 SUPERFAMILY Protein kinase-like (PK-like) 488 663 IPR011009 -
Vimu10g03616 697 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 285 - -
Vimu10g03616 697 ProSiteProfiles Protein kinase domain profile. 515 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03616 697 SUPERFAMILY L domain-like 91 398 - -
Vimu10g03616 697 Pfam Protein tyrosine and serine/threonine kinase 520 663 IPR001245 GO:0004672|GO:0006468
Vimu10g03616 697 PRINTS Leucine-rich repeat signature 217 230 - -
Vimu10g03616 697 PRINTS Leucine-rich repeat signature 172 185 - -
Vimu10g03616 697 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 664 - -
Vimu10g03616 697 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 27 186 - -
Vimu10g03616 697 Gene3D Ribonuclease Inhibitor 191 413 IPR032675 -
Vimu10g03616 697 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 289 419 - -
Vimu10g03616 697 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Vimu10g03616 697 SMART tyrkin_6 515 691 IPR020635 GO:0004713|GO:0006468
Vimu10g03616 697 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Vimu10g03616 697 Gene3D Transferase(Phosphotransferase) domain 1 591 688 - -
Vimu10g03616 697 FunFam Predicted protein 485 590 - -
Vimu10g03616 697 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Vimu10g03616 697 MobiDBLite consensus disorder prediction 470 491 - -
Vimu10g03616 697 FunFam - 591 687 - -
Vimu10g03616 697 Pfam Leucine rich repeat 216 252 IPR001611 GO:0005515
Vimu10g03616 697 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Vimu10g03616 697 SMART LRR_typ_2 121 145 IPR003591 -
Vimu10g03616 697 SMART LRR_typ_2 240 265 IPR003591 -
Vimu10g03616 697 SMART LRR_typ_2 314 337 IPR003591 -
Vimu10g03616 697 SMART LRR_typ_2 217 239 IPR003591 -
Vimu10g03616 697 SMART LRR_typ_2 169 194 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03616 Vimu-Chr10 45510268 45513349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03616 30 688 Miscellaneous Gene Families AT2G16250 56.757 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vimu10g03616 PK_Tyr_Ser-Thr 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03616 - - gmx:100776587 1087.02