Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03614 ATGGCGGCATCCGCCACCGTCTCCGGCGGTGCGTTGACGGATCTAACTCACCGAACACCCTTTCTCGGTCTCAAACTCTACGCTCTGATCCTCATTCTAGTTATAATGGTGGTGGCAGCAGTGCTCCTGATCCTCCTCTGCTTCCGCCGGAGCTCGAAGAAGCGGAAAATGCGAGTGAAGCACAGCTCCGGCGCGATCCCGCTGGTATCGAAGGAGATCCTGGAGGTGAATACTCTGGAGCTGAAAATCGAAGAGGTGGATGAGGAGGATCCGAAGAAGGAGGAGATGAAGCTTGAAGATAGTCCGTCGGTGGAGTCCCCGAACATAGGGTGGGGACGCTGGTATAGCCTCAGAGAGCTTGAGGCTGCGACGCAAGGGTTCGCCGAAGGGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTATAGAGGAAATTTGCTCGACGGTTCTGTCGTCGCGGTCAAAAATCTTCTCAACAACAAGGGGCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCACAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGACGTAGGACCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGGACTGCGAAAGGGCTAGCCTACTTGCACGAAGGATTAGAACCCAAAGTTGTCCATCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGCCTGAGAAAAGCTATGTGACAACGCGTGTAATGGGGACATTTGGATATGTGTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAAGGCAGCGATGTGTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGGAGGAGTCCAATCGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTATAGGAATGGTTGCAAATCGTCTTGGTGATGAACTAGTTGATCCTTTAATAGATATTCAACCCTCTCAAAGATCTTTGAAACGAGCTTTACTTGTTTGTCTGCGCTGTATAGATTTGGATGTCAGTAAGCGACCAAAGATGGGCCAAATTGTTCACATGCTTGAGGCTGACGATTTTCCCTTTCGTTCTGAACATCGAACAAATAGAGAGAAAGATCCTGTTTATTCTCAAGCAGCTGGTTCCAGCAAGATTCCATATCCAACAAGGCATGTAGAGCCAGTAGATAAATCAAGCTGGAGATGA 1335 0.4727 MAASATVSGGALTDLTHRTPFLGLKLYALILILVIMVVAAVLLILLCFRRSSKKRKMRVKHSSGAIPLVSKEILEVNTLELKIEEVDEEDPKKEEMKLEDSPSVESPNIGWGRWYSLRELEAATQGFAEGNVIGEGGYGIVYRGNLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGPEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFIGMVANRLGDELVDPLIDIQPSQRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSEHRTNREKDPVYSQAAGSSKIPYPTRHVEPVDKSSWR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03614 444 Gene3D Transferase(Phosphotransferase) domain 1 203 415 - -
Vimu10g03614 444 CDD STKc_IRAK 133 399 - -
Vimu10g03614 444 MobiDBLite consensus disorder prediction 406 444 - -
Vimu10g03614 444 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Vimu10g03614 444 FunFam Putative receptor-like serine/threonine-protein kinase 203 413 - -
Vimu10g03614 444 Pfam Protein kinase domain 129 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03614 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vimu10g03614 444 SMART serkin_6 127 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03614 444 PANTHER OS01G0323000 PROTEIN 102 419 - -
Vimu10g03614 444 Coils Coil 69 89 - -
Vimu10g03614 444 SUPERFAMILY Protein kinase-like (PK-like) 106 399 IPR011009 -
Vimu10g03614 444 ProSiteProfiles Protein kinase domain profile. 127 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03614 444 FunFam Probable serine/threonine-protein kinase At1g01540 107 202 - -
Vimu10g03614 444 Gene3D Phosphorylase Kinase; domain 1 88 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03614 Vimu-Chr10 45502425 45506215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03614 83 399 Receptor kinase-like Gene Family AT4G02010 46.483 1.20e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu10g03614 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03614 - - vra:106762137 764.992