Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03611 ATGCATATTCCTCCATATCCAGTTCCAGTTGGAGGTTGGTCAGCAACCCAGGGTGTTAGTTCTGAAATGAGCTCTGCCAGTTACTCTGGGCCCCATGGTCCCGTTTTGCCACCTCCGCACCCCACGGTGGCTCTCGGATTCAACCAAAGCTCCTTCACTTTCGAGGAGCTCTCGGCTGCCACTGCTGGCTTTAGCCAACACAACCTGCTGGGCCAGGGTGGCTTCGGATTCGTCCACAAAGGTGTTCTACCCAACGGCAAGGAAATTGCAGTGAAGAGCCTCAAATTTACTAATGGCCAAGGAGACAGAGAATTCCAAGCTGAGGTTGAGATCATTAGCCGCGTCCACCATCGCCATCTTGTCTCACTCGTCGGCTATTGCATCTCACAAGCCAACAAGCTCCTTGTTTATGAGTTTGTGCCTAACAATACCCTCGAATACCACCTTCATCGAAAGGGTCAACCTGTGATGGATTGGAATACCAGGCTCAAAATTGCGATCGGATCGGCTAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTCGAAGCCAAAGTGGCGGATTTTGGGTTGGCAAAGATTAGTCAAGACACTACCACTCACGTTTCCACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCAGAGTATGCATCAACCGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACAGGTCGGGAACCTGTGGACAACACTGGGGAGTTTGAAGATAGTTTGGCCGACTGGGCTAGACCACTCTGTACAAAGGCAATGGAGGATGGAAGTTTTGAAGGGCTTGTGGATCCACGTTTAGAGGGTAATTATGACGAGCGCCAAATGTCATGTATGGTGGCTTGTGCTGCATTTAGCGTAAGGTACGCGGCAAAGAAGCGACCGAAAATGAGTCAGATTGTGAGAGTGCTGGAGGGTGATGTGTCAGTAGAAGTGCTTGGTTACGAGGGAGTGAAACCTGGGTTCGGCGGCGAAAGCGGGGAGTATAAGGCTGACATGATGAAGTTCAGGAAACTAGCATTAGAAGAGAGTGGCAGTGAACAATCATCTGCTGAATATGGCAATATTGCCGGCAGGAGGGTAGGAGCCCGAATGCACACTCCTTAA 1203 0.4904 MHIPPYPVPVGGWSATQGVSSEMSSASYSGPHGPVLPPPHPTVALGFNQSSFTFEELSAATAGFSQHNLLGQGGFGFVHKGVLPNGKEIAVKSLKFTNGQGDREFQAEVEIISRVHHRHLVSLVGYCISQANKLLVYEFVPNNTLEYHLHRKGQPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKISQDTTTHVSTRVMGTFGYLAPEYASTGKLTDKSDVFSFGIMLLELITGREPVDNTGEFEDSLADWARPLCTKAMEDGSFEGLVDPRLEGNYDERQMSCMVACAAFSVRYAAKKRPKMSQIVRVLEGDVSVEVLGYEGVKPGFGGESGEYKADMMKFRKLALEESGSEQSSAEYGNIAGRRVGARMHTP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03611 400 Gene3D Transferase(Phosphotransferase) domain 1 140 344 - -
Vimu10g03611 400 CDD STKc_IRAK 70 338 - -
Vimu10g03611 400 FunFam Proline-rich receptor-like protein kinase PERK1 140 346 - -
Vimu10g03611 400 Gene3D Phosphorylase Kinase; domain 1 41 139 - -
Vimu10g03611 400 FunFam proline-rich receptor-like protein kinase PERK1 42 139 - -
Vimu10g03611 400 SUPERFAMILY Protein kinase-like (PK-like) 44 336 IPR011009 -
Vimu10g03611 400 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 38 373 IPR047117 -
Vimu10g03611 400 ProSiteProfiles Protein kinase domain profile. 64 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03611 400 Pfam Protein tyrosine and serine/threonine kinase 67 334 IPR001245 GO:0004672|GO:0006468
Vimu10g03611 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vimu10g03611 400 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Vimu10g03611 400 MobiDBLite consensus disorder prediction 380 400 - -
Vimu10g03611 400 SMART serkin_6 64 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03611 Vimu-Chr10 45483562 45485455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03611 11 373 Trihelix Transcription Factor Family AT1G70460 59.946 4.61e-148 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu10g03611 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03611 - - gmx:100806299 622.083