LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03608	TTGGACTGCGAGAGAGGGAGAGAGTGTGTGATAATCGTTTGTTGCCTTCTCTCAGAAATGGTTACGTTCAGGTTTCACCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCAAAGATTTACCGCATGAAGCTTTGGGCCACCAACGAGGTTCGGGCAAAATCCAAGTTCTGGTACTTCTTGAGGAAGCTGAAGAAGGTTAAGAAGAGCAATGGCCAAATGCTCGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATTAAGAACTATGGGATATGGTTGAGGTATCAAAGTAGAACCGGTTATCACAACATGTACAAGGAGTACCGTGACACCACTCTAAATGGTGCAGTTGAGCAGATGTACAATGAGATGGCATCTCGTCACAGGGTGAGGTGCCCATGTATCCAAATTATTAAGACTGCTACCATCCCGGCTAAGCTTTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCCAAAATCAAGTTTCCATTAGTTTTCAAGAAAGTCAGGCCACCATCCAGGAAGCTCAAGACCACATACAAGGCCAAAAAGCCAAACTTGTTTATGTAA	594	0.4562	MDCERGRECVIIVCCLLSEMVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM	197

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03608	197	PIRSF	Ribosomal_L18a	20	197	IPR021138	GO:0003735\|GO:0005840\|GO:0006412
	Vimu10g03608	197	FunFam	60S ribosomal protein L18a	91	166	-	-
	Vimu10g03608	197	SUPERFAMILY	RplX-like	90	165	-	-
	Vimu10g03608	197	Gene3D	-	90	163	-	-
	Vimu10g03608	197	FunFam	60S ribosomal protein L18a	20	90	-	-
	Vimu10g03608	197	PANTHER	60S RIBOSOMAL PROTEIN L18A	21	196	IPR028877	-
	Vimu10g03608	197	Hamap	50S ribosomal protein L18Ae [rpl18a].	25	88	IPR028877	-
	Vimu10g03608	197	Gene3D	-	16	89	-	-
	Vimu10g03608	197	Pfam	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	26	147	IPR023573	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03608	Vimu-Chr10	45458486	45460557	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g03608	19	197	Cytoplasmic Ribosomal Protein Gene Family	AT2G34480	92.179	3.99e-124	347

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03608	K02882		-	jre:108990266	364.385

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