Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03608 TTGGACTGCGAGAGAGGGAGAGAGTGTGTGATAATCGTTTGTTGCCTTCTCTCAGAAATGGTTACGTTCAGGTTTCACCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCAAAGATTTACCGCATGAAGCTTTGGGCCACCAACGAGGTTCGGGCAAAATCCAAGTTCTGGTACTTCTTGAGGAAGCTGAAGAAGGTTAAGAAGAGCAATGGCCAAATGCTCGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATTAAGAACTATGGGATATGGTTGAGGTATCAAAGTAGAACCGGTTATCACAACATGTACAAGGAGTACCGTGACACCACTCTAAATGGTGCAGTTGAGCAGATGTACAATGAGATGGCATCTCGTCACAGGGTGAGGTGCCCATGTATCCAAATTATTAAGACTGCTACCATCCCGGCTAAGCTTTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCCAAAATCAAGTTTCCATTAGTTTTCAAGAAAGTCAGGCCACCATCCAGGAAGCTCAAGACCACATACAAGGCCAAAAAGCCAAACTTGTTTATGTAA 594 0.4562 MDCERGRECVIIVCCLLSEMVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03608 197 PIRSF Ribosomal_L18a 20 197 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vimu10g03608 197 FunFam 60S ribosomal protein L18a 91 166 - -
Vimu10g03608 197 SUPERFAMILY RplX-like 90 165 - -
Vimu10g03608 197 Gene3D - 90 163 - -
Vimu10g03608 197 FunFam 60S ribosomal protein L18a 20 90 - -
Vimu10g03608 197 PANTHER 60S RIBOSOMAL PROTEIN L18A 21 196 IPR028877 -
Vimu10g03608 197 Hamap 50S ribosomal protein L18Ae [rpl18a]. 25 88 IPR028877 -
Vimu10g03608 197 Gene3D - 16 89 - -
Vimu10g03608 197 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 26 147 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03608 Vimu-Chr10 45458486 45460557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03608 19 197 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.179 3.99e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03608 K02882 - jre:108990266 364.385