Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03602 ATGGAGAAAGGGGTAGGACGGTCTTTTGACATTGAGGAAACAAACTATAGTAGTAGTATGGAGTGGGTGACTCGAGTAGTGGAGGTGGAGATGAAGGAACACGCTCTTCTTCATACTTCACATTTCTTATCTGCAATCTTCATTTCCCTCCGAAACCCTACATTTTCGCCTAGTGGTGGATCAGTTTCCGGTGGTTCCTCGCCAATTAAGGTACGCTGCTTTTACTTCCTGAGCGGTTGTGAGATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTTCTGATATGGATGTTGTTGATGCGGCTTTGCATGGCCAGCATGTGTCGTCTTCCCCTACTGACAATTCGCCTGCTCAGCAACAGCAGGATCAAGTAATGGTCGAACAGGGCGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTACCAGAGACTAGTGTAATTAGCGAGAATCAGTTTGAGGTTGAAGATTCCAAGACCGTTTCGCACCATGAACTGATCACTCCTAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGGGAAACATTTATGAAAGAGCTTGAGAATTTTTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTACGGAGAGCCACTAAATTGTCTTAAGTTGTGGAGAGCTGTTATCAGACTGGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGACTGGGGAACTACAACTCCCTGTTGGATCATTCCATCAATCTCCAAATGTAGAAAAAGAGTCTAGGGATCATCAGAGGTGGTCGGTTGCTGCTGGTTCTCTACTACACATGATAAGGAAGGAGAAATTTTACAGAAAAGGGCATTTGAAACATGACTTGGAAGCATGTAACAACATTTCAACCTCTACCATCCGTTTGTATATATCAAATAATGAGTTTCTTTTTCAGACTACTGTTTACCAGGCTCCAGGATCAGGTAGAGCACGAAGGGATGCAGCAGCCCGTGCAATGCAGGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCTACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATGATTAATAAACAGAGGACCCCAGCTGGTTTGGAGCATGCTGAGAAAGCTGCAAATATTGAAGGAGACAGACAATTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCAGACTGGGTGAAGATCAACGTACGAGAAACTAAAGATTGTTTTGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTGGTTATAACTGGTCTGCCAGAACACATCGATAATCCATGGGGAATTACCCCCTTTAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCCCTTCAGACATCCGCTGTTGTTAGTTTGCATGGTCGGCTATTTGTACGGGTTCCCTTTGAGCAGGGATCGGGCGAGTTTATGCTTGCAAATACTGAAGCCCTGTTGGGTTAG 1707 0.4517 MEKGVGRSFDIEETNYSSSMEWVTRVVEVEMKEHALLHTSHFLSAIFISLRNPTFSPSGGSVSGGSSPIKVRCFYFLSGCEMEDGEKPTGNSHGISDMDVVDAALHGQHVSSSPTDNSPAQQQQDQVMVEQGDDNKNGDSDPSNVPETSVISENQFEVEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSPNVEKESRDHQRWSVAAGSLLHMIRKEKFYRKGHLKHDLEACNNISTSTIRLYISNNEFLFQTTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTPAGLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGSGEFMLANTEALLG 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03602 568 FunFam AT-rich interactive domain-containing protein 3 447 555 - -
Vimu10g03602 568 SUPERFAMILY HSP20-like chaperones 464 551 IPR008978 -
Vimu10g03602 568 SMART bright_3 201 292 IPR001606 GO:0003677
Vimu10g03602 568 MobiDBLite consensus disorder prediction 108 131 - -
Vimu10g03602 568 CDD ARID 202 287 - -
Vimu10g03602 568 SMART ARID_2 197 287 - -
Vimu10g03602 568 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 455 566 IPR002068 -
Vimu10g03602 568 MobiDBLite consensus disorder prediction 108 177 - -
Vimu10g03602 568 Pfam ARID/BRIGHT DNA binding domain 203 287 IPR001606 GO:0003677
Vimu10g03602 568 CDD ACD_sHsps_p23-like 471 550 - -
Vimu10g03602 568 Gene3D - 454 557 IPR008978 -
Vimu10g03602 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 108 553 IPR045147 GO:0006357
Vimu10g03602 568 MobiDBLite consensus disorder prediction 138 158 - -
Vimu10g03602 568 ProSiteProfiles ARID domain profile. 200 291 IPR001606 GO:0003677
Vimu10g03602 568 MobiDBLite consensus disorder prediction 159 177 - -
Vimu10g03602 568 FunFam AT-rich interactive domain-containing protein 3 200 299 - -
Vimu10g03602 568 Gene3D - 201 299 IPR036431 GO:0003677
Vimu10g03602 568 SUPERFAMILY ARID-like 189 298 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03602 Vimu-Chr10 45389485 45397674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03602 109 553 ARID Transcription Factor Family AT1G76510 54.484 1.14e-146 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu10g03602 ARID 6.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03602 - - vra:106762506 939.488