Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03600 ATGGCTGCTTACAACAACATCGAGGGAAGTGAAGAACCAGAATTAGCTGTTTTTGTTGCCCCGCCGACTTTGATCGGACCAGCCCAGAACCCGACCCAACACACCCAGAACGACGGAGATGGGGCCTCCAACGCCGCCCCACGCCCACGTGGACGGCCTCCAGGATCCAAGAACAAGCCCAAACCACCACCCATCATAGTCACATGCGACAGCGCGAATGCCCTACACTCGCACGTGCTGGAGGTCTCCCTCGGTGCCGAGGTGATGGAGAGTCTCTCTACATACGCATGCCGTCGAGGGAGAGGAGTTTGTGTGCTCAGTGGCACTGGCACGGTGGCCAATGTTGCACTCCGTCAACCGGCGGGAAGCGTGCTCACTTTCCCCGGACTGTTCGAAATAGTTTCCATAACTGGGACGGTACTTCCTCCACCGGCGCCGCCTGGTTCCGACGGGTTGTCGGTTTCTTTGTCTGGAGCGCAGGGACAGATGGTTGGGGGCATCGTGGTGGCCCCTCTGATGGCTTCGAGTGACGTGGTGTTGGTGGCTGCTTCCTTTGCTAACGCCATGTTGGAAAGGTTACCCTTGCCCTTGAATCACCACCATGATGACGATGAAGATCCAGCTGCCTTCACCGGAAATGGACAGGTGGGAGATGGAAGGAACAACCCCTTTTGGCGGTGGTTGCAGAGTGAGCTATTTGAATTGGGCGGAAGTGCATGA 720 0.5736 MAAYNNIEGSEEPELAVFVAPPTLIGPAQNPTQHTQNDGDGASNAAPRPRGRPPGSKNKPKPPPIIVTCDSANALHSHVLEVSLGAEVMESLSTYACRRGRGVCVLSGTGTVANVALRQPAGSVLTFPGLFEIVSITGTVLPPPAPPGSDGLSVSLSGAQGQMVGGIVVAPLMASSDVVLVAASFANAMLERLPLPLNHHHDDDEDPAAFTGNGQVGDGRNNPFWRWLQSELFELGGSA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03600 239 MobiDBLite consensus disorder prediction 1 65 - -
Vimu10g03600 239 Gene3D - 76 201 - -
Vimu10g03600 239 CDD DUF296 78 185 IPR005175 -
Vimu10g03600 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 215 IPR014476 GO:0003680
Vimu10g03600 239 MobiDBLite consensus disorder prediction 26 42 - -
Vimu10g03600 239 ProSiteProfiles PPC domain profile profile. 72 208 IPR005175 -
Vimu10g03600 239 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 186 IPR005175 -
Vimu10g03600 239 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03600 Vimu-Chr10 45386372 45387949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03600 48 195 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 67.925 1.23e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03600 - - gmx:100778715 261.151