Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03597 ATGGCGTACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGCTACTCAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTTGTCATCACCGATAAGAACACAGGGCGATCCAAGGGCTATGGTTTCGTGAGTATCTCTTTTATTCCATTTTTGGATTTTATTCGTTATTACTGCTGTTGTGCTGTCACTACCAACACTACACAACACGCCGTTTGA 321 0.5047 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVSISFIPFLDFIRYYCCCAVTTNTTQHAV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03597 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 81 IPR000504 GO:0003723
Vimu10g03597 106 SMART rrm1_1 33 98 IPR000504 GO:0003723
Vimu10g03597 106 SUPERFAMILY RNA-binding domain, RBD 11 78 IPR035979 GO:0003676
Vimu10g03597 106 Gene3D - 29 79 IPR012677 -
Vimu10g03597 106 PANTHER BOULE-RELATED 9 79 - -
Vimu10g03597 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03597 Vimu-Chr10 45362799 45363119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03597 21 78 C2H2 Transcription Factor Family AT2G19380 46.552 9.98e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03597 - - gmx:100779244 143.665