Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03593 ATGTCGGGATCTGACATGGTAACCAGGGACCAATTCTCCGTTGGGATGCACAACCCTCAATCCCAACCTCAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGATGGGGCTGGGGTATTCGCCTCCCCTACCATCAACATCAACAACATCAACGGCGGTGAATCCTCTCCAGTCAGTGTGCCTCCGGGCTTGGGTCTGGGCCAGACCCATCCCCAGGCCATGGTGGATAACTCCACTGAGACACTCAAGAGAAAGAGGGGAAGACCCAGGAAGTACGGGCCTGATGGTGGCATGGCTTTGAGCTTGAACACTACCTCTCCTCCTGGTGGCGCCACGGTACCTGTTGGCCATTCCGGGGCATTTCCGGCGGCTCCTCTCTCTGATTCTGCCTCAGCCGGTACCGGAAAGCGTAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAAGCTCAAAGTTTTCTGGGCCAGGAGGTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCAAGAAATGTTTGCATTTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAGCCTGCATCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTACTGAAAATGGTTCTCATGGCGAAAGGAGTGGGGGCTTGAGTGTGTCCTTGTCTGGGCCAGACGGCCGCGTCTTGGGGGGTGGAGTCGCAGGTCTTTTGGTGGCTGCTTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCAATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCAGCAGAAAAGGTTTCCACAGCTGGTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTGAGTGAATCTTCAGCACAGGAGACTGCATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAATAAACTTGACTCTTCACTCATCACTGTTTTCTGTAGTGTCACATCAGGTTCTACTCACTTGTCATGGTATTACTCATTGAAGACACCTGTTACATTATTAGCTTTGTGTAATGTTAGTTGGAGGATTAACATTTGA 1179 0.4962 MSGSDMVTRDQFSVGMHNPQSQPQQQQPQLHQNMRMDYAAADGAGVFASPTININNINGGESSPVSVPPGLGLGQTHPQAMVDNSTETLKRKRGRPRKYGPDGGMALSLNTTSPPGGATVPVGHSGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKSSKFSGPGGFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGSHGERSGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRMRNVSAAEKVSTAGGQSSSPSRGTLSESSAQETASTISTAPPQRQAFQACPGNKLDSSLITVFCSVTSGSTHLSWYYSLKTPVTLLALCNVSWRINI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03593 392 Gene3D - 170 300 - -
Vimu10g03593 392 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 285 - -
Vimu10g03593 392 MobiDBLite consensus disorder prediction 1 33 - -
Vimu10g03593 392 CDD DUF296 169 283 IPR005175 -
Vimu10g03593 392 MobiDBLite consensus disorder prediction 304 338 - -
Vimu10g03593 392 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 284 IPR005175 -
Vimu10g03593 392 MobiDBLite consensus disorder prediction 1 34 - -
Vimu10g03593 392 MobiDBLite consensus disorder prediction 59 163 - -
Vimu10g03593 392 ProSiteProfiles PPC domain profile profile. 165 307 IPR005175 -
Vimu10g03593 392 MobiDBLite consensus disorder prediction 294 338 - -
Vimu10g03593 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 330 IPR039605 GO:0003680
Vimu10g03593 392 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Vimu10g03593 392 SMART AT_hook_2 142 154 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03593 Vimu-Chr10 45339501 45342253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03593 81 325 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.140 4.87e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03593 - - pvu:PHAVU_009G008300g 489.189