Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03590 ATGCTGGCAATGGAAGAGGTACTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTCATAACCTTTTACCTCGCTTCAAAAGTCTTCAATGGCTGCTTCACCACCGTCAAGTTTGCCGAGGTTGATCTCAATAGATGCGAGCCTTGGGAACTTCCAGGTATATATTCTTCTGCCCAAACCCTCACAAGAAGGGTGTGCATGTTCAGTTTCATCAACCAGGATGATGTTATGTATGTATTGAATATTGATGTTCGAAAAGGTGGGTGTAATGAAGCAGATGTGGCGAAGATGGGAGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCGACTGGACTGAGAACAAACAGGGCGACAGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGAACCCTACTTGGGATGAAGAAGACACTTGTTTTTTACAAAGGAAGGGCCCCTCGTGGAGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCCTTCCTCACCCTCATCCTCATCACATCTCAAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGCGGAAAAGAGGACTGCATTGCTGCAAAACCAAGGACAAGGACATTCAGATGCTTCTTCTTCCCCAACAAAAAGTTCTTTACCTCCTTTACTTCCCAGCCCAACTTCCTTTCCATTGGAACTAGAAGACCAAAATCACCTCTCTCATTCTCACCCTTATCTTTTCCCATTGCACGCATCACCGCAACTCACTAACACCAGAAACCATCCATCATTTTCTGACCTATTCTCGCCCCTCTCACAACAACAAAACTGCATCCTCAAGGCCAAGGAAAAAACAGCTCCAAAAGTAATCAAAACGGAGGAGGCTACAGCATTGTATCAGTACCATTTACTGGGTGACACTGACAACCTGCGGTTAAACCAAAACCTAAGCAATTTCCCAAACCCTTTCGCTGATGTTGAGGTGGATGGTGCTGGGCTGATGGCATTCGCAGGAGGACCAAATGGTGAAGTTAGGGACATGTCCCCTTCGACAGCCTTCAAAAGGGTAGGGTTGCAGCAGCTCATAGATGCTGCTCATATCGGAATAGATTCTTGGCCCCTGGCCCAGCATGTTTAA 1212 0.4678 MLAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGCFTTVKFAEVDLNRCEPWELPGIYSSAQTLTRRVCMFSFINQDDVMYVLNIDVRKGGCNEADVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHHISKEEWVICRIFHKSAEKRTALLQNQGQGHSDASSSPTKSSLPPLLPSPTSFPLELEDQNHLSHSHPYLFPLHASPQLTNTRNHPSFSDLFSPLSQQQNCILKAKEKTAPKVIKTEEATALYQYHLLGDTDNLRLNQNLSNFPNPFADVEVDGAGLMAFAGGPNGEVRDMSPSTAFKRVGLQQLIDAAHIGIDSWPLAQHV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03590 403 SUPERFAMILY NAC domain 109 216 IPR036093 GO:0003677|GO:0006355
Vimu10g03590 403 Gene3D NAC domain 31 221 IPR036093 GO:0003677|GO:0006355
Vimu10g03590 403 Pfam No apical meristem (NAM) protein 23 189 IPR003441 GO:0003677|GO:0006355
Vimu10g03590 403 SUPERFAMILY NAC domain 17 85 IPR036093 GO:0003677|GO:0006355
Vimu10g03590 403 ProSiteProfiles NAC domain profile. 22 216 IPR003441 GO:0003677|GO:0006355
Vimu10g03590 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 282 - -
Vimu10g03590 403 MobiDBLite consensus disorder prediction 226 243 - -
Vimu10g03590 403 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03590 Vimu-Chr10 45326564 45328845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03590 1 304 NAC Transcription Factor Family AT1G76420 50.479 2.19e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g03590 NAM 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03590 - - gmx:100780313 447.588