Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03588 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCAACTCGTCCAACGACTCCGCCGTTGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCACTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGCTTCTCCTCTGCCCCCACTCCCCAGCATCCTCCCGCTGCTGCCAACAAAGGCGTCAAGAAAAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACAGCCGAATCCGCAGGTAAGTTCGCCGATTGCGCGATCTGCCTCTCGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCACGTTAGCTGTATCGACGCCTGGCTCAGATCGCACTCCTCGTGTCCATCGTGCCGTCAGATTCTGGTGGTTACTCGGTGCGACAAGTGCGGCGGGATCCCGGCTCCGTCGAGCTCCAGCTCCGCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCAGTCGGAATCCGAGGCCAGATTCAAGGTAAGGGAGGATAACGGCAATAGGTTGAAGATCGGAGAAGAAGATAGAGAGAGGGAATGGAAAGTGAATGCTGCAATTGAGTTGCCACCAACACAACTTCGCATGGCCTCTGTTTGGACACTGCAATTTCGCTCGCTTTCGCTTCGCCCTTGTTCCTTCACCAGTGGCACTAGTAATAACAGTATCATCACAACTAGAAATCGCATTGTTATCAGAAACGGGATCTCCAAATGGCGCTCTCGCACCCAACAACTCAAACACGATTCCATCAATTCCGTTTCCAAATTTTACCATCAACTCGTCAATTCCGTCACCATCCCCTCCTTCCTGCTGAATCGAAGCGGTGGAAACAATTTTCCGATCTGGGTATGTGTTGCGCTTGTGGTTTTGATTGGAGCATTGAGGGTTGTGTCCAGAAAAAAGGAGCGTCCAGGTTCCGTGGCTGATCTTGTGAGACGTGGACAACTCAAATCTGATAGAAGAGGCATATCAAGGCCTCTCAAGTACGAAGACCCGTTCAATAATCCTTTTGTCAAGGTTGGCAAAAGCAACTCAACCGTTGAGATGTGTGGTAAGGTTTACCGCTTAGCCCCTGTTACACTTACCGAAGAGCAGCAGGCCACTCACCAGAGAAGGAGATCGCGTGCCTATCAGTGGAAGCGACCCACTATTTTCCTTAGAGAAGGGGACTCAGTGCCTCCGGATGTTGATCCTGATACTGTCAGGTGGATTCCGGCTAATCATCCTTTTGCTACCACTGCTACTGATCTGGATGAAGACTTGGCACAGAACAATGTCTATCAAAAGCATGGAGTTCCTTTCCGGATTCAAGCCGAGCATGAAGCCCTGCAGAAAAAGCTCGAAGCCCTACAGAATGACCAGAAACTCAATAAACTAGTGATAGATCCCATCAATGCTAAAGAATTTGAGAGGCCATTCAACTCCCAAGCCAGATTAAATGAACAAGCAGAGAAGAGCACTGAGCAGAAAATCAATAAACTAGTGATAGATCCTATCAGTGCTAAAGAATTTGAGAGACCGTTCAACTCCCACGCCAGATTAAATGATCAAGCAGAGAAGAGCTCTGTAAACGATCAAGTGAGTGATTCTGACTCCCCTAATATAGATAGTGACCCAAATCACTTTGAAAGTACATCATCCGAAGATCCAACTCTTTAG 1716 0.5169 MTRPFRYLGERNSSNDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRFSSAPTPQHPPAAANKGVKKKVLRSLPKLTATAESAGKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVTRCDKCGGIPAPSSSSSAPPPPPPPPPQSESEARFKVREDNGNRLKIGEEDREREWKVNAAIELPPTQLRMASVWTLQFRSLSLRPCSFTSGTSNNSIITTRNRIVIRNGISKWRSRTQQLKHDSINSVSKFYHQLVNSVTIPSFLLNRSGGNNFPIWVCVALVVLIGALRVVSRKKERPGSVADLVRRGQLKSDRRGISRPLKYEDPFNNPFVKVGKSNSTVEMCGKVYRLAPVTLTEEQQATHQRRRSRAYQWKRPTIFLREGDSVPPDVDPDTVRWIPANHPFATTATDLDEDLAQNNVYQKHGVPFRIQAEHEALQKKLEALQNDQKLNKLVIDPINAKEFERPFNSQARLNEQAEKSTEQKINKLVIDPISAKEFERPFNSHARLNDQAEKSSVNDQVSDSDSPNIDSDPNHFESTSSEDPTL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03588 571 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vimu10g03588 571 MobiDBLite consensus disorder prediction 153 186 - -
Vimu10g03588 571 MobiDBLite consensus disorder prediction 533 571 - -
Vimu10g03588 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Vimu10g03588 571 SMART ring_2 96 137 IPR001841 -
Vimu10g03588 571 CDD RING-H2_EL5-like 95 138 - -
Vimu10g03588 571 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 214 506 IPR034572 GO:0009507|GO:0010020
Vimu10g03588 571 Pfam Ring finger domain 95 138 IPR001841 -
Vimu10g03588 571 MobiDBLite consensus disorder prediction 526 571 - -
Vimu10g03588 571 MobiDBLite consensus disorder prediction 157 173 - -
Vimu10g03588 571 SUPERFAMILY RING/U-box 82 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03588 Vimu-Chr10 45296348 45310256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03588 5 149 C3H Transcription Factor Family AT1G20823 66.667 5.55e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03588 - - gmx:100812404 593.193