Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03577 GAAAAATCGTTCTTGATTGAGATGAATTCGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTCTGGGATTTGTGAGGGCTGCAAACGTGTCGTCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCTATTCTAGGGAAAGTGGCTAAAATTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAGCATTCTACATGGAACTAAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTTGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCGCATATAATATCCCATGTTGCAAATGAACTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTGACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCAATATACGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATATCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTGGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGAAACAATGGATGTTCTCCAGGGAGTACTTGTTCTGCGCCAGCATACACCTGATTCAGATAGAAAAAGGGGATTTGTCTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCCTTGATGCTTTTTTCAGTCAGGGTGGGGTTCTTTCGAGTACAAATTACACAAGTTTGGGTGGTGCTGCTGATAAGGGAAGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAAGAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAAGCAGATCGATCTATCATTCATCCTGCCTATGACGTGCTTAATGTGGTTGGAACTGGCCTTAGGAGGGTTGGTTACTGGTCTAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCCAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATCCGAGTCAGTTATCGTGAATTTGTTTCACCAGTGAAGGGAACTGAGATGTTTAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCCGTTCCTTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTATCCGTTTGATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAATCGGACAAGGGTTGTAGATTTTACACAACCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCATTTACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCATGTTTCTTCCTTTTCATTGGGATAGTTATATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGTCCACCTAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTCTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAACAGTTATCTTCTCCTATCAATGGAATAGATAGCTTAAAAGCTGGTGATGAACCTATAGGTTACCAAGTTGGTTCATTTGCAGAACATTACCTGACTCAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTTGGAACTCCAGAAGAATATGCTATGGCCCTAAAGCTTGGTCCTAAAAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCTGAGGATATGTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTTTAGACAATGCTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTATTTCTCATTTGCGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATCATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTCCATCTTCTACTACTGCCTGGTCAATTTCTGGTCGTTTTCAGAGATTTCTCTCGCTCATTGACGAGAAAGAAGATCCATCAAGGAGTAATGGAAGAAAGAGAGAAAGATCACTTGATGATCAACTGGTAAGGCAGTCAAAGAGGGTACAACTACAACTACAAACAGAAATGACACCTAATTCAACTTAA 2799 0.4316 EKSFLIEMNSFRVVCWVVWCLGFVRAANVSSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADTSILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKRGFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARALDAFFSQGGVLSSTNYTSLGGAADKGSDLNLDAMSIFDNGTLLLKNILQSDFVGLSGRMKFEADRSIIHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELIRLITTGYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPINGIDSLKAGDEPIGYQVGSFAEHYLTQDIGISKSRLIALGTPEEYAMALKLGPKKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDMSTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIMFQLWKSPPSEPPSSTTAWSISGRFQRFLSLIDEKEDPSRSNGRKRERSLDDQLVRQSKRVQLQLQTEMTPNST 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03577 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 865 IPR015683 -
Vimu10g03577 932 SMART GluR_14 475 817 IPR001320 GO:0015276|GO:0016020
Vimu10g03577 932 Pfam Ligand-gated ion channel 817 847 IPR001320 GO:0015276|GO:0016020
Vimu10g03577 932 SUPERFAMILY Periplasmic binding protein-like II 450 817 - -
Vimu10g03577 932 FunFam Glutamate receptor 711 819 - -
Vimu10g03577 932 Gene3D - 745 780 - -
Vimu10g03577 932 Pfam Receptor family ligand binding region 58 412 IPR001828 -
Vimu10g03577 932 Gene3D - 781 814 - -
Vimu10g03577 932 FunFam Glutamate receptor 469 584 - -
Vimu10g03577 932 PIRSF IGluLR_plant 7 932 IPR017103 -
Vimu10g03577 932 Gene3D - 56 402 - -
Vimu10g03577 932 CDD PBP1_GABAb_receptor_plant 38 430 IPR044440 -
Vimu10g03577 932 SUPERFAMILY Periplasmic binding protein-like I 32 466 IPR028082 -
Vimu10g03577 932 FunFam Glutamate receptor 152 304 - -
Vimu10g03577 932 CDD GluR_Plant 472 814 - -
Vimu10g03577 932 Gene3D - 469 584 - -
Vimu10g03577 932 PRINTS Metabotropic glutamate GPCR signature 156 172 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vimu10g03577 932 PRINTS Metabotropic glutamate GPCR signature 105 131 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vimu10g03577 932 PRINTS Metabotropic glutamate GPCR signature 137 156 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vimu10g03577 932 PRINTS Metabotropic glutamate GPCR signature 172 189 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vimu10g03577 932 Gene3D - 585 715 - -
Vimu10g03577 932 FunFam Glutamate receptor 585 715 - -
Vimu10g03577 932 Pfam Bacterial extracellular solute-binding proteins, family 3 495 816 IPR001638 -
Vimu10g03577 932 Gene3D - 152 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03577 Vimu-Chr10 45250825 45254420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03577 20 910 Ion Channels AT1G42540 64.595 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03577 K05387 - gmx:100777478 1604.73