Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03572 ATGGCGGGATTCCTTGGGGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCTAGTAGAGTGGGTTCATCTCTGATCAACATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGACCCAAGCGCAAAGATATTAATAGAGGCTGGAATACTTGCTCCTCTTGTCAATGACCTTTTCGCAGTGGGTCCTAACCTGCTTCCCACACGATTGAAAGAGATCTCTGCTACGATTCTTGCCAGTGTTGTAAACTCTGGAGAAGACTTCTATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCCATAGAGTGCAAACTACTACAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGTGTTGTGTCTGCTATCAAAAGCTCTGGTGCCACAATCAGTCTAGTTCAGTTCATTGAAGCACCACAGAAAGATCTGCGTCTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAACTGATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATAAAAGTCATATCAGAAAATACAGGGATCAGTGAAGAGCAGGCAGCGGCAGTCGGCCTTTTAGCCGAACTACCCGAAAGGGACTTGGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGACAGCGAGAGATCAGAGGAAATCGCTTCATCACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACTTATGTCTTGGCTGAAGAGCCTGATGCCATTGCACTCTGCCGTGACTACAACCTTGCTGCACTCTTTATTGACCTGCTTCAGTCCAATGGACTGGACAACGTGCAGATGGTATCTGCCACAGCTCTGGAGAATCTATCCATAGAGTCAAAAAACTTAACCAAATTACCGGAGGTGCCACCGCCCAGCTTTTGTGCTTCGATGTTTTCATGCTTCAGCAAGCAGCCAGTGATAAGTGGATTGTGTAGGCTCCATAGAGGAATCTGCTCTTTGAAGGAAACGTTTTGCCTGTATGAAGGGCAGGCAGTGCCAAAGTTAGTAGGGCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCTGCATTATCGACTTTGATAGATGATGGAGTAGACATAGAACAAGGGGTGGCAATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAGAGAACAGAGACATTGAGAAGGAGAGCAGTTTGGGCAGTGGAGAGACTGTTGAGAACAGATGATATAGCTTGTGAGGTTTCTGCAGACCAGAATCTGAGCACTGCACTCGTGGATGCATTCCAACATGGTGATTATCGAACTAGACAGACCGCTGAGCGTGCTCTCAAACATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCAGAACCTAGGATGA 1554 0.4505 MAGFLGELVLNNDVKVLVASRVGSSLINIMKSGNMQSREAALKALNQISSCDPSAKILIEAGILAPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSISFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGQELTDALRGSVGQLGSLIKVISENTGISEEQAAAVGLLAELPERDLGLTRQLLDEGAFVMVISRVIAIRQREIRGNRFITPFLEGLVKIVARVTYVLAEEPDAIALCRDYNLAALFIDLLQSNGLDNVQMVSATALENLSIESKNLTKLPEVPPPSFCASMFSCFSKQPVISGLCRLHRGICSLKETFCLYEGQAVPKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSADQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFQNLG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03572 517 Gene3D - 5 190 IPR011989 -
Vimu10g03572 517 Pfam Armadillo/beta-catenin-like repeat 389 415 IPR000225 GO:0005515
Vimu10g03572 517 Gene3D - 277 508 IPR011989 -
Vimu10g03572 517 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 513 - -
Vimu10g03572 517 SMART arm_5 294 335 IPR000225 GO:0005515
Vimu10g03572 517 SMART arm_5 376 417 IPR000225 GO:0005515
Vimu10g03572 517 SMART arm_5 421 463 IPR000225 GO:0005515
Vimu10g03572 517 SMART arm_5 10 50 IPR000225 GO:0005515
Vimu10g03572 517 SMART arm_5 51 96 IPR000225 GO:0005515
Vimu10g03572 517 SUPERFAMILY ARM repeat 113 503 IPR016024 -
Vimu10g03572 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 415 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03572 Vimu-Chr10 45222639 45224192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03572 1 517 U-box Gene Family AT1G76390 65.318 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03572 - - gmx:100815928 894.804