Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03571 ATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGATAGTTTTCATTTTGAGAGGTTGCACATTGAGCCTATGTATGATGCTTTTGTATGTCCATTGACGAAGCAAGTGATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGAGAGAGTGGAAGGAGACTGGTTTGCCCTTTGACTCTTCAGGAGTTAAGAAGCGCAGAACTGAATCCAAGCATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGACATGGCTCGCAGGTCGTTGAATATGGCGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTGCAGTACATCTGCCGAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTGGAAGCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTCGTGGTAGAAGAAGATGATGAGAACAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTATTGTGAAATTCCTTTCCCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAACTCTCGAAGTCTGCTACCCTCTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTCAATAAGGCTGAGGAAACATTGTCGAATCTGGAGAGGTACGAGGCTAATGTTCGGCAGATGGCTGAATGTGGTAGATTGCAGCCTCTTCTTACCCAACTTCTTGAAGATGGTGATAGGGACTTAGGTATTATGGGGTGTCTAAGTCTCATATTGAGTAGTATCGGATGTTTGTCTTCTGAAATAGGGGCCATGAATGTGTTTGGTTGTTTCATTGTCCCTGAGTCAGCCGTAGCGAACCAAATAGCGGCTGTTATAGCGGAGCTACGTGATGAACCCAAAATTCCTAAATAG 1050 0.4495 MAASWDGSNDPGSQSDDSFHFERLHIEPMYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNMASPENETLQALKYVQYICRRSRSNKHTVRNAGLIPMIVDMLKSGSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSNSEDLLTVNKAEETLSNLERYEANVRQMAECGRLQPLLTQLLEDGDRDLGIMGCLSLILSSIGCLSSEIGAMNVFGCFIVPESAVANQIAAVIAELRDEPKIPK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03571 349 Gene3D - 117 323 IPR011989 -
Vimu10g03571 349 CDD RING-Ubox_PUB 30 87 IPR045210 -
Vimu10g03571 349 SMART arm_5 181 221 IPR000225 GO:0005515
Vimu10g03571 349 SMART arm_5 139 179 IPR000225 GO:0005515
Vimu10g03571 349 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Vimu10g03571 349 SUPERFAMILY RING/U-box 23 110 - -
Vimu10g03571 349 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 288 - -
Vimu10g03571 349 Coils Coil 253 273 - -
Vimu10g03571 349 SUPERFAMILY ARM repeat 119 308 IPR016024 -
Vimu10g03571 349 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Vimu10g03571 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 116 IPR013083 -
Vimu10g03571 349 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03571 Vimu-Chr10 45219691 45221199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03571 20 288 U-box Gene Family AT1G20780 66.914 3.61e-120 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03571 - - gmx:100789746 529.635